PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109304.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 344aa MW: 37407.1 Da PI: 8.5033

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	43	103	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ XP_009109304.1 43 KDQAINCPRCNSVNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 103 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	32	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-33	44	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MATVKPLEEI VTNTCLTPRA SQPQPPPSVG AAGVAERKTR PEKDQAINCP RCNSVNTKFC 60 YYNNYSLTQP RFFCKGCRRY WTEGGSLRNI PVGGGSRKNK RSHSSSISSS LDISKNHSDS 120 TQPATKKHHS DHHPHHHLMS ISQQGLTGQN PKIFETTQQN LKLGFPPHGL IRTNFTDLIH 180 NTGNNNTSTN NPFIGSSCSA TSALATSPLD LIRNNNCNNR NTSNSSFMGF PVHNQGPTSE 240 GFSMQDHYKP SNSNTTLLGF SLDHHHDNSE FHGGFQGGEG REVGDDVNGR HLFPFEDLKL 300 PVSSSSSATI NIDVNDHQKR ASGGDAAATS GGYWTGMLSG GSWC

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MATVKPLEEI VTNTCLTPRA SQPQPPPSVG AAGVAERKTR PEKDQAINCP RCNSVNTKFC  60
YYNNYSLTQP RFFCKGCRRY WTEGGSLRNI PVGGGSRKNK RSHSSSISSS LDISKNHSDS  120
TQPATKKHHS DHHPHHHLMS ISQQGLTGQN PKIFETTQQN LKLGFPPHGL IRTNFTDLIH  180
NTGNNNTSTN NPFIGSSCSA TSALATSPLD LIRNNNCNNR NTSNSSFMGF PVHNQGPTSE  240
GFSMQDHYKP SNSNTTLLGF SLDHHHDNSE FHGGFQGGEG REVGDDVNGR HLFPFEDLKL  300
PVSSSSSATI NIDVNDHQKR ASGGDAAATS GGYWTGMLSG GSWC

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109304.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109304.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q8LAP8	1e-157	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	M4D248	0.0	M4D248_BRARP; Uncharacterized protein
STRING	Bra010548.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-127	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]