PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108912.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 393aa    MW: 45373.2 Da    PI: 9.9941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.2e-1823971294
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ++ l++p  f+++h +gk + +kt++l++ +s r+Wevk+  ++++    lt+GW++F+ka++L+ gD+++Fk++g++ f   v
  XP_009108912.1 23 DTH-LTIPFAFFSKHiQGK-TMKKTVKLRSyTSDRTWEVKI--DGRR----LTRGWNDFAKAHDLRIGDIIIFKHEGDMAF--SV 97
                    555.9**********6544.6778******8999*******..9998....************************999988..44 PP
2B368.11.2e-21156250398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++++++lk++ l+lp    ++  ++k+++ +++l +++g+sW+  l++r ++g+y++++GW++F+ +n+ k+gD +vF l+g+ ++++++ v+
  XP_009108912.1 156 VSEVTASNLKLDTLYLPVGARSSSALNKRCH-EMILVNKEGNSWTASLKFRESGGMYYIRRGWRRFCLDNRRKVGDLFVFNLVGDGKTTPMMCVC 249
                     567899*************999999999886.*****************************************************9999**9999 PP

                     - CS
              B3  98 r 98 
                      
  XP_009108912.1 250 P 250
                     6 PP
3B339.21.3e-12288385199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT-.-TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangL.kegDfvvFkldgrsefe 91 
                     f++++++ +++ s+ ++lp  f++ +g++k   k+++l+d++g +   kl      +++    l+kGWk F++an++ k g+++v++l++ +++ 
  XP_009108912.1 288 FLTITLTRYNFISSKFILPIAFTNINGLNK--YKEIILMDKHGVKRLTKLVQdgpHNNR--RGLGKGWKLFCEANDVfKIGESFVLELVW-EDTV 377
                     7788889999999**********8889995..569***************777554444..45*************846***********.7888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     +v+k+++k
  XP_009108912.1 378 PVLKFCSK 385
                     9**99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-218105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.05611103IPR003340B3 DNA binding domain
CDDcd100171.56E-1412100No hitNo description
SMARTSM010198.1E-2214103IPR003340B3 DNA binding domain
PfamPF023622.8E-122595IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-18153243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17154243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.281154252IPR003340B3 DNA binding domain
CDDcd100176.98E-16154250No hitNo description
SMARTSM010193.1E-21155252IPR003340B3 DNA binding domain
PfamPF023629.3E-21156250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-16280385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-16282384IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-10287384No hitNo description
SMARTSM010192.7E-18288386IPR003340B3 DNA binding domain
PfamPF023622.2E-12288385IPR003340B3 DNA binding domain
PROSITE profilePS508638.318288385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVNPPLQSPT NPHFFQPLLP GFDTHLTIPF AFFSKHIQGK TMKKTVKLRS YTSDRTWEVK  60
IDGRRLTRGW NDFAKAHDLR IGDIIIFKHE GDMAFSVTPF GPSCCEFQYT QSHIIKKEAD  120
IDDDDEDDNE RQYKIRNGLK PKTEPMSSYS FDYCFVSEVT ASNLKLDTLY LPVGARSSSA  180
LNKRCHEMIL VNKEGNSWTA SLKFRESGGM YYIRRGWRRF CLDNRRKVGD LFVFNLVGDG  240
KTTPMMCVCP EEECSELVSK HLSRGRRSRK TKKRSKWVAS SSSRRNRFLT ITLTRYNFIS  300
SKFILPIAFT NINGLNKYKE IILMDKHGVK RLTKLVQDGP HNNRRGLGKG WKLFCEANDV  360
FKIGESFVLE LVWEDTVPVL KFCSKVKVET VDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.198050.0bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108912.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A397YFK20.0A0A397YFK2_BRACM; Uncharacterized protein
STRINGBra010225.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-83B3 family protein