PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108800.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 251aa    MW: 29085.4 Da    PI: 10.1496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-161964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
   XP_009108800.1 19 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                     899****************************9.************96 PP
2Myb_DNA-binding53.36.5e-1771113145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++
   XP_009108800.1  71 KKPFTEEEEERLLQAHRFQGNR-WASIARLFP-GRTDNAVKNHFH 113
                      689*******************.*********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2061469IPR017930Myb domain
SMARTSM007176.0E-131867IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2818112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-252072IPR009057Homeodomain-like
CDDcd001677.86E-122263No hitNo description
PfamPF139211.7E-162282No hitNo description
SMARTSM007176.6E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129417.13470120IPR017930Myb domain
CDDcd001672.60E-1073113No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1973118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMSRGSNSF DNKKISCQRG HWRPIEDDHL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLQAHRFQG NRWASIARLF PGRTDNAVKN HFHVIIARRK  120
RESSSSTATS TFNQSWHNIF SHSSSLTRLD RSQFGLWTYQ KDKSRGLWPY TFVPAPKDGQ  180
FGSSSISNLH KDIYPERIKS KELVDHHNYE FQAATPDHKK NSISEDGPSM GDNGGKKNVT  240
FIDFLGVGLL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108800.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A397YAQ70.0A0A397YAQ7_BRACM; Uncharacterized protein
TrEMBLM4F0H00.0M4F0H0_BRARP; Uncharacterized protein
STRINGBra034565.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-158myb domain protein 69