PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108674.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 325aa    MW: 36934.2 Da    PI: 4.5868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18116166155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrdp++   r+r++lg+f taeeAa  +++a+ +l+g
  XP_009108674.1 116 KKFRGVRRRP-WGKYAAEIRDPVQ---RRRIWLGTFSTAEEAAVVYDNAAIRLRG 166
                     59********.**********755...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.75E-32116173No hitNo description
Gene3DG3DSA:3.30.730.101.8E-28117174IPR001471AP2/ERF domain
PROSITE profilePS5103222.787117174IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-21117174IPR016177DNA-binding domain
SMARTSM003802.1E-38117180IPR001471AP2/ERF domain
PfamPF008473.1E-10117166IPR001471AP2/ERF domain
PRINTSPR003672.3E-9118129IPR001471AP2/ERF domain
PRINTSPR003672.3E-9140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV EENKRKNSTG RDSARLVRVC VMDGDATDSS  60
SDDEEEFMFP RRRVKRLINE IRVEPSSSSS GEVSALAAVD SPPQMVSVSG ADQNQKKFRG  120
VRRRPWGKYA AEIRDPVQRR RIWLGTFSTA EEAAVVYDNA AIRLRGPDAL TNFTVPPKPE  180
PEPDRESNVS VYSTSESVED SHHHLSSPTS VLNYHIPEPV DEPVKPVKQE FIEPEPISCH  240
LDEVYNSFPL DITFPDNYFT ETLEDISIFD QSMSPIQSSE SNFFDDLMLF DNSNIGGESY  300
SSKMKEIGSI FNDLDDSLIS ELLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21116173159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21116173462ATERF1
3gcc_A2e-21116173462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108674.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_013741598.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-149CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078GTN90.0A0A078GTN9_BRANA; BnaA03g48910D protein
TrEMBLA0A397KZ550.0A0A397KZ55_BRACM; Uncharacterized protein
TrEMBLM4FIB00.0M4FIB0_BRARP; Uncharacterized protein
STRINGBra040839.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-135cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]