PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009108661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 278aa MW: 31721.6 Da PI: 8.1553 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 103 | 1.8e-32 | 21 | 77 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprC+stntkfCyynn+s+sqPry Ck+Crr Wt+GGalrn+P+Gg+ k+k++ XP_009108661.1 21 PRVCPRCNSTNTKFCYYNNHSVSQPRYKCKECRRNWTHGGALRNIPIGGSGHKKKST 77 678***********************************************9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-20 | 16 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-30 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.742 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDYSSVFAER GNEVNQEKPP PRVCPRCNST NTKFCYYNNH SVSQPRYKCK ECRRNWTHGG 60 ALRNIPIGGS GHKKKSTTID QPFVSQAVSA EIQQVSRHRQ PFLHAQETNQ FVESFGGSSS 120 GFDVDNHIGS FPEISGDGVL PFQSFPPMDR SYFHDGLFQQ DYYNAESNDL IGNHLINQSI 180 GSYNVVSSNH NSYINQEDRI NQSIGSYNVV SSNHNSYVKQ KHQDKWNQSL NNTMNMNHNA 240 STSGSREWWD TDHKNKYKGK IKNNCVYESS YHLEKHGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009108661.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018509163.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.4-like | ||||
Swissprot | Q9SUA9 | 5e-59 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | M4DWI7 | 0.0 | M4DWI7_BRARP; Uncharacterized protein | ||||
STRING | Bra020881.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 1e-56 | Dof-type zinc finger domain-containing protein |