PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108632.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 398aa    MW: 45887 Da    PI: 4.9161
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35581502103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+ +nsf+v+d+e+f+ ++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_009108632.1  58 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDPESFSMTLLPIFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKT 143
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009108632.1 144 IRRRKTS 150
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3453147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5854147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3754147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3058147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDPSYRFIKE EFPRGFNDSP SPPSSYLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT  60
KTYDLVEDSR TNHVVSWSQA NNSFIVWDPE SFSMTLLPIF FKHNNFSSFV RQLNTYGFRK  120
VNPDRWEFAN EGFLRGQKHL LKTIRRRKTS NNNQMQPPQS SSQLQSLDNC CIEVGKYGLD  180
GEMDSLRRDK QVLMMELVKV RQQQQSTKMD LTLLEDKLKK TESKQKQMMS FLARAMQNPD  240
FLQQLIEQKE KRKNTEEAID KKRQRPIDQG KRHVVCVEDY DDGGGGYGRY GKDAGSSSAF  300
FDMKQETHGD MSELDRLAMH IQGLGDQCNK EDVVLDVGKG NEEEQHKERY QDENNEIYGE  360
GFWEDLLNEG QNFDLQGDDE ENVDVLIEQL GYLGSSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-235315012123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108632.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM4E4U60.0M4E4U6_BRARP; Uncharacterized protein
STRINGBra023800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B