PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108343.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 364aa    MW: 40949.1 Da    PI: 6.5972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
   XP_009108343.1 15 KGPWMPEEDDKLRAYINKKGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.41.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
   XP_009108343.1  68 RGEFSDEEESNIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7861062IPR017930Myb domain
SuperFamilySSF466893.37E-2912109IPR009057Homeodomain-like
SMARTSM007172.9E-111464IPR001005SANT/Myb domain
PfamPF002494.5E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221669IPR009057Homeodomain-like
CDDcd001671.26E-91762No hitNo description
PROSITE profilePS5129426.93563117IPR017930Myb domain
SMARTSM007171.0E-1667115IPR001005SANT/Myb domain
PfamPF002496.9E-1668112IPR001005SANT/Myb domain
CDDcd001679.54E-1370113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRSPCCDQD KDVKKGPWMP EEDDKLRAYI NKKGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FSDEEESNIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
RIDPTTHEPR TNDLTPILDV SQMLAAAFSN GQFGNSNLFN NNTALENHLK LQLIHKMLQM  180
ITPKAVPNIN SFCTNSLIPK HEPVVNDFNT NSVNPKPEPG AGQLNAIGGQ QVFINKSDNE  240
DFMPSFGHDW DGFEDNQLPG LVTVSQENLK SAKPGTNTTT EVNYKTGPDM MPGYCGDQLR  300
EIPSTGLISV SPETSGLKYR GTTQHSSASD VLEDWEKFLD DETSDSCWKS FLDLTSPTSS  360
PCPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121174108B-MYB
1gv2_A2e-25151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25151174105C-Myb DNA-Binding Domain
1msf_C2e-25151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108343.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A3P6BN330.0A0A3P6BN33_BRACM; Uncharacterized protein
STRINGBra021033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39