PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108324.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 281aa    MW: 31347 Da    PI: 4.7377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15141191255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G r ++  g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+ +l+g
  XP_009108324.1 141 HYSGARMRP-FGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFRLRG 191
                     588889999.8*********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-28140200IPR001471AP2/ERF domain
CDDcd000189.36E-25141199No hitNo description
SuperFamilySSF541719.81E-20141201IPR016177DNA-binding domain
SMARTSM003802.5E-29141205IPR001471AP2/ERF domain
PfamPF008471.9E-10141191IPR001471AP2/ERF domain
PROSITE profilePS5103221.799141199IPR001471AP2/ERF domain
PRINTSPR003672.0E-7142153IPR001471AP2/ERF domain
PRINTSPR003672.0E-7165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPKVTTT TNPWIASETS SDFSIFGSFD QTGFDFSEFE  60
TKPEITDLVT PRFTDSFEFE PEANAEIQLA SSESFTFQSN PRRKPPLKIE PPSRTEWIQF  120
ATANPEPEQL PVHVAAEEKR HYSGARMRPF GKFAAEIRDP NRRGTRVWLG TFDTAIEAAR  180
AYDQAAFRLR GSKAIVNFPL EVGTWNPRAD VGQNKRKRDG EGEEVTVVAK ALKTEESHAV  240
ETETSSLTAV DDWDLTELLS MPLLSPLSPH PPFGYPQLTV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25140204468ATERF1
3gcc_A2e-25140204468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.57360.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108324.10.0PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotQ8VZ911e-125EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLM4DX030.0M4DX03_BRARP; Uncharacterized protein
STRINGBra021049.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-113ethylene responsive element binding factor 6