PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107990.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 286aa    MW: 32419.7 Da    PI: 10.3706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind35.72.3e-11941772102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHH.TTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnm.YgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k+y++++d++++ ++sws+n+nsfvv+  +   +         +++  Fv  +++  gF+kv++++         weF+++ F +g+k+ll+
  XP_009107990.1  94 FLSKTYDMVDDPATDPIVSWSSNNNSFVVSLYHGEWN---------KQLDLFVWTMDIsQGFRKVDSDR---------WEFANEGFLRGQKHLLK 170
                     9****************************87554444.........345566666665259****9999.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     +i r+k 
  XP_009107990.1 171 TITRRKP 177
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-1388170IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-1689175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-2490175IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-1094175IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MCLLSPPLSF TFLKSFKKFP KISLHHALTF ERLHISSRRS NIRKQTTKIA MAGGNRSSTI  60
DGAESGGGSV AMESKEIPQP QPVAVLSANA PPPFLSKTYD MVDDPATDPI VSWSSNNNSF  120
VVSLYHGEWN KQLDLFVWTM DISQGFRKVD SDRWEFANEG FLRGQKHLLK TITRRKPAHA  180
HGHGQQHSNG QNPSVSSCVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQSTDNNLQR  240
MVQRLQGMEN RQQQLMSFLA KAVQSPHFIS QFLQQQNQQS ESSTSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841101e-137AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026841e-137CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-137AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107990.10.0PREDICTED: heat stress transcription factor A-1d-like isoform X1
SwissprotQ9LQM71e-106HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLM4F3571e-139M4F357_BRARP; Uncharacterized protein
STRINGBra035507.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-94heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]