PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009107560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 339aa MW: 39190.2 Da PI: 8.5715 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV + +g W A+I+ ++r++lg+f +a eAa+a++ a kl+g XP_009107560.1 47 TKYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAAEAAAAYDSASIKLRG 95 69****9888.8******9993.....4************************998 PP | |||||||
2 | B3 | 93.2 | 1.8e-29 | 170 | 261 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+ltpsdv+k++rlv+pkk+a +h +g+ e+++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+ XP_009107560.1 170 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVEDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIVFY 261 89*****************************9988777789**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-6 | 47 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.10E-13 | 47 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-17 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-14 | 48 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.622 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-19 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-31 | 164 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-28 | 168 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.89E-25 | 169 | 261 | No hit | No description |
SMART | SM01019 | 1.2E-19 | 170 | 275 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-26 | 170 | 262 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 170 | 273 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MVILHEISNE AKTTTEASGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW 60 GAQIYADHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY 120 TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG 180 KLNRLVIPKK YAVKHLPFIS DDQEEGEAVE DVEVVFYDST MRQWKFRYCY WRSSQSFVFT 240 RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH 300 NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-26 | 169 | 260 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009107560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079828 | 1e-131 | AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence. | |||
GenBank | AY560883 | 1e-131 | AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-131 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107560.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-180 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A3P6B9N4 | 0.0 | A0A3P6B9N4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DCR5 | 0.0 | M4DCR5_BRARP; Uncharacterized protein | ||||
STRING | Bra014282.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-161 | RAV family protein |