PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 339aa    MW: 39190.2 Da    PI: 8.5715
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-114795155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+g
  XP_009107560.1 47 TKYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAAEAAAAYDSASIKLRG 95
                    69****9888.8******9993.....4************************998 PP

2B393.21.8e-29170261183
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+ltpsdv+k++rlv+pkk+a +h         +g+  e+++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+
  XP_009107560.1 170 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVEDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIVFY 261
                     89*****************************9988777789**************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-64795IPR001471AP2/ERF domain
CDDcd000184.10E-1347107No hitNo description
Gene3DG3DSA:3.30.730.104.7E-1748105IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1448107IPR016177DNA-binding domain
PROSITE profilePS5103217.62248105IPR001471AP2/ERF domain
SMARTSM003809.1E-1948111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-31164262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-28168263IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-25169261No hitNo description
SMARTSM010191.2E-19170275IPR003340B3 DNA binding domain
PfamPF023623.5E-26170262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506170273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVILHEISNE AKTTTEASGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW  60
GAQIYADHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY  120
TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG  180
KLNRLVIPKK YAVKHLPFIS DDQEEGEAVE DVEVVFYDST MRQWKFRYCY WRSSQSFVFT  240
RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH  300
NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2616926013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798281e-131AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBankAY5608831e-131AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds.
GenBankCP0026841e-131CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107560.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-180RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P6B9N40.0A0A3P6B9N4_BRACM; Uncharacterized protein
TrEMBLM4DCR50.0M4DCR5_BRARP; Uncharacterized protein
STRINGBra014282.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-161RAV family protein