PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107515.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 579aa    MW: 64018.7 Da    PI: 6.0074
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15209268155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_009107515.1 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268
                     57*******************999975578446*************************98 PP
2AP251.13.2e-16311362155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_009107515.1 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-21209278No hitNo description
PfamPF008477.7E-12209268IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17209278IPR016177DNA-binding domain
PROSITE profilePS5103219.164210276IPR001471AP2/ERF domain
SMARTSM003802.1E-29210282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15210277IPR001471AP2/ERF domain
PRINTSPR003676.8E-6211222IPR001471AP2/ERF domain
PfamPF008474.1E-11311362IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17311371IPR016177DNA-binding domain
CDDcd000184.75E-24311370No hitNo description
PROSITE profilePS5103218.65312370IPR001471AP2/ERF domain
SMARTSM003802.0E-32312376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17312370IPR001471AP2/ERF domain
PRINTSPR003676.8E-6352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNNNWLGFSL SPYEQNHHRK DVCSSTTTTA VDVAGEYCYD PTAASDESSA IQTSFPSPFG  60
VVLDAFTRDN NSHSRDWDIN GSACNNIHND EQDGPKLENF LGRTTTIYNT NENVGDIDGS  120
GCYGGGDGGG GSLGLSMIKT WLRNQPVDNV DNQENGNGAK GLSLSMNSST SCDNNNYSSN  180
NLVAQGKTID DSVEATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK  240
GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEIEEMKHM TRQEYVASLR  300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF  360
RGLTAVTNFD MNRYNVKAIL ESPSLPIGSA AKRLKEANRP VPSMMMISNN VSESENNASG  420
WQNAAVQHHQ GVDLSLLQQH QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM  480
TNIDHQSSVS DDSVTVCGNV VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ  540
HSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119131SGCYGGGDGGGGS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179050.0AF317905.1 Brassica napus AP2/EREBP transcription factor BABY BOOM2 (BBM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303138.10.0AP2-like ethylene-responsive transcription factor BBM2
RefseqXP_009107515.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM4DBW80.0M4DBW8_BRARP; Uncharacterized protein
STRINGBra013978.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein