PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107316.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 449aa    MW: 51193.7 Da    PI: 5.1862
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.52.2e-21251308155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     +pr+ Wt +L ++F+ea++  GG++kA Pk +l++   m+++gLt+++v SHLQkYRl
  XP_009107316.1 251 RPRISWTGDLQQKFLEAIDIVGGPKKASPKVLLKClhdMNIEGLTRNNVSSHLQKYRL 308
                     59****************************998765559******************8 PP
2Response_reg54.37.3e-19361411107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + +  +++++e+  y +v++ +d+eea++ l  +++++++++ D  mpg++Gl++l  i ++  +lp++++++ ++ e + +a+  G
  XP_009107316.1  36 VLVVDANLSTLLDMKEIMERCAY-HVTAYADAEEAIAFLtkCKHEINIVIWDYHMPGINGLQALAIIGSKM-DLPVVIMSGDDQTESVMNAMVHG 128
                     899999999**************.***************666677**********************6654.8********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a  +++Kp+ +e +
  XP_009107316.1 129 ACHCVMKPVRKE-I 141
                     ********7655.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-2732157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-2934157No hitNo description
SMARTSM004484.1E-1534145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.54435150IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-1636142IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.64E-1537145No hitNo description
Gene3DG3DSA:3.40.50.23002.2E-29191196No hitNo description
SuperFamilySSF466893.4E-11249311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-19250312IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17252308IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSIAHITEDG DKALFLQQET SEINSPLNEF PPSTNVLVVD ANLSTLLDMK EIMERCAYHV  60
TAYADAEEAI AFLTKCKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMSGDDQTES  120
VMNAMVHGAC HCVMKPVRKE IIATIWQHIV RKRMMSKPGL VPPVVVHGDY SKQEKDDSVT  180
VDQDDSEESI DKIEEKATQK QTMICIEETQ PMQSHLVKSN GSDQDDDDSR SVRNYNYEQS  240
IDKKKERDLK RPRISWTGDL QQKFLEAIDI VGGPKKASPK VLLKCLHDMN IEGLTRNNVS  300
SHLQKYRLSL EETKIPQQFP ETGWSSLSRP SPFLGMNNGF IAPTSLRNGP AVYPVQDNQY  360
QNGYLAINNN QFVTNNMHGF PYSENDHHLQ QQHQQRQYQL SNQMMNYMMR NEPQQAYNSI  420
GLTDLEPNIY PSLPYYPNEF LFDGYNFSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107316.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLM4DCF80.0M4DCF8_BRARP; Uncharacterized protein
STRINGBra014172.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.16e-69response regulator 19