PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009107040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25267.3 Da PI: 9.3075 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss XP_009107040.1 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 60 | 1e-20 | 88 | 171 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++ q+eksl+ +Rs+K el+ +q+ +l+++e ++ +e ++Lr+k XP_009107040.1 88 LEELKKEMDIMVKNIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKEMEIKVLDERRRLREK 171 68899*****************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.525 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-32 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.72E-42 | 3 | 74 | No hit | No description |
Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.552 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.1E-19 | 89 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ NGRLYEFSSS 60 EMEKTIERYG DFSNEYFVLG RPQVQPYLEE LKKEMDIMVK NIDLLEVQQR KLMGQGLGSC 120 SVAELQEIDI QIEKSLRIVR SRKAELYADQ LGKLKEMEIK VLDERRRLRE KEIRERLLRP 180 LLPVTLHTEK GEPEGGYRTK HSSEVETDLF IGLPVARP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009107040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107033.1 | 1e-156 | PREDICTED: MADS-box protein AGL71 isoform X1 | ||||
Refseq | XP_009107040.1 | 1e-156 | PREDICTED: MADS-box protein AGL71 isoform X3 | ||||
Refseq | XP_009107045.1 | 1e-156 | PREDICTED: MADS-box protein AGL71 isoform X3 | ||||
Refseq | XP_009107050.1 | 1e-156 | PREDICTED: MADS-box protein AGL71 isoform X3 | ||||
Swissprot | Q9LT93 | 1e-109 | AGL71_ARATH; MADS-box protein AGL71 | ||||
TrEMBL | A0A397XIY7 | 1e-148 | A0A397XIY7_BRACM; Uncharacterized protein | ||||
STRING | Bra028283.1-P | 1e-137 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.3 | 1e-108 | AGAMOUS-like 71 |