PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25267.3 Da    PI: 9.3075
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.5e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  XP_009107040.1  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 59
                    68***********************************************96 PP

2K-box601e-20881711497
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++  q+eksl+ +Rs+K el+ +q+ +l+++e ++ +e ++Lr+k
  XP_009107040.1  88 LEELKKEMDIMVKNIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKEMEIKVLDERRRLREK 171
                     68899*****************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-32383IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-29323IPR002100Transcription factor, MADS-box
CDDcd002659.72E-42374No hitNo description
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.55288179IPR002487Transcription factor, K-box
PfamPF014863.1E-1989171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ NGRLYEFSSS  60
EMEKTIERYG DFSNEYFVLG RPQVQPYLEE LKKEMDIMVK NIDLLEVQQR KLMGQGLGSC  120
SVAELQEIDI QIEKSLRIVR SRKAELYADQ LGKLKEMEIK VLDERRRLRE KEIRERLLRP  180
LLPVTLHTEK GEPEGGYRTK HSSEVETDLF IGLPVARP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-19173173MEF2 CHIMERA
6byy_B9e-19173173MEF2 CHIMERA
6byy_C9e-19173173MEF2 CHIMERA
6byy_D9e-19173173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107033.11e-156PREDICTED: MADS-box protein AGL71 isoform X1
RefseqXP_009107040.11e-156PREDICTED: MADS-box protein AGL71 isoform X3
RefseqXP_009107045.11e-156PREDICTED: MADS-box protein AGL71 isoform X3
RefseqXP_009107050.11e-156PREDICTED: MADS-box protein AGL71 isoform X3
SwissprotQ9LT931e-109AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397XIY71e-148A0A397XIY7_BRACM; Uncharacterized protein
STRINGBra028283.1-P1e-137(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-108AGAMOUS-like 71