PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107038.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28242.7 Da    PI: 9.4298
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.31e-284797151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  XP_009107038.1 47 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 97
                    68***********************************************96 PP
2K-box50.31e-171261981486
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++  q+eksl+ +Rs+K+  +l++ ++l++ke +
  XP_009107038.1 126 LEELKKEMDIMVKNIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKEIKVLDERRRLREKEIR 198
                     68899*****************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-403998IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.5253999IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-294161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-3241121IPR002100Transcription factor, MADS-box
CDDcd002652.19E-4141112No hitNo description
PfamPF003192.0E-264895IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-296176IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-297697IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.582126218IPR002487Transcription factor, K-box
PfamPF014866.6E-15127196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MHFSEIFVIG FYFPHQFYSS VLYFSCANYS SSVKYCRKMV RGKIEIKKIE NVTSRQVTFS  60
KRRSGLFKKA HELSVLCDAQ VAAIVFSQNG RLYEFSSSEM EKTIERYGDF SNEYFVLGRP  120
QVQPYLEELK KEMDIMVKNI DLLEVQQRKL MGQGLGSCSV AELQEIDIQI EKSLRIVRSR  180
KEIKVLDERR RLREKEIRER LLRPLLPVTL HTEKGEPEGG YRTKHSSEVE TDLFIGLPVA  240
RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-1839111173Myocyte-specific enhancer factor 2B
1tqe_Q4e-1839111173Myocyte-specific enhancer factor 2B
1tqe_R4e-1839111173Myocyte-specific enhancer factor 2B
1tqe_S4e-1839111173Myocyte-specific enhancer factor 2B
6byy_A3e-1839111173MEF2 CHIMERA
6byy_B3e-1839111173MEF2 CHIMERA
6byy_C3e-1839111173MEF2 CHIMERA
6byy_D3e-1839111173MEF2 CHIMERA
6bz1_A3e-1839111173MEF2 CHIMERA
6bz1_B3e-1839111173MEF2 CHIMERA
6bz1_C3e-1839111173MEF2 CHIMERA
6bz1_D3e-1839111173MEF2 CHIMERA
6c9l_A4e-1839111173Myocyte-specific enhancer factor 2B
6c9l_B4e-1839111173Myocyte-specific enhancer factor 2B
6c9l_C4e-1839111173Myocyte-specific enhancer factor 2B
6c9l_D4e-1839111173Myocyte-specific enhancer factor 2B
6c9l_E4e-1839111173Myocyte-specific enhancer factor 2B
6c9l_F4e-1839111173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009107038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107038.11e-177PREDICTED: MADS-box protein AGL71 isoform X2
SwissprotQ9LT933e-99AGL71_ARATH; MADS-box protein AGL71
TrEMBLM4EHL81e-138M4EHL8_BRARP; Uncharacterized protein
STRINGBra028283.1-P1e-138(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.12e-95AGAMOUS-like 71