PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106860.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 206aa    MW: 23171.2 Da    PI: 4.8218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.11.5e-07153172120
                     ---SS-EEEEEEE--TT-SS CS
            WRKY   1 ldDgynWrKYGqKevkgsef 20 
                     ldDgy+W+ YGqK ++g+++
  XP_009106860.1 153 LDDGYSWKNYGQKLIRGNPN 172
                     59****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-8140173IPR003657WRKY domain
SuperFamilySSF1182908.24E-6147172IPR003657WRKY domain
PROSITE profilePS5081110.843148172IPR003657WRKY domain
PfamPF031061.3E-4154173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKEVCHVTMG GPVITPKTSA SSIPLIEFRV FFPTKISDSK ENFMEMTSFS ASQLIFTIAP  60
PSPDAIIGPP EMVESSGGDH ATMMISNNGL PHQRMDVDQA PEDHNIIDVL NVEPSSPKRR  120
GNEVSLSNMI IASRTGRYDE RVIIQMKSEE NNLDDGYSWK NYGQKLIRGN PNEVLQMHIQ  180
WVRREEACGE KSRQCEVIGD YILWES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106856.11e-123PREDICTED: probable WRKY transcription factor 10 isoform X1
TrEMBLA0A0A7RE623e-67A0A0A7RE62_BRAOC; WRKY40 protein
TrEMBLA0A3P6BL753e-67A0A3P6BL75_BRAOL; Uncharacterized protein
STRINGBra030848.1-P1e-67(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.17e-13WRKY DNA-binding protein 10