PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106858.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 247aa MW: 27809.4 Da PI: 9.4815

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.7	2e-27	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+ YGqK ++g+++ r YY+Ct++gC vkk+ver a++ k ++itY g+H+h+ XP_009106858.1 110 LDDGYSWKNYGQKLIRGNPNVRRYYKCTFSGCDVKKHVERRADNAKSLVITYYGNHEHD 168 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-28	97	170	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-24	104	170	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	105	170	IPR003657	WRKY domain
SMART	SM00774	1.3E-27	110	169	IPR003657	WRKY domain
Pfam	PF03106	2.3E-21	111	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEMTSFSASQ LIFTIAPPSP DAIIGPPEMV ESSGGDHATM MISNNGLPHQ RMDVDQAPED 60 HNIIDVLNVE PSSPKRRGNE VSLSNMIIAS RTGRYDERVI IQMKSEENNL DDGYSWKNYG 120 QKLIRGNPNV RRYYKCTFSG CDVKKHVERR ADNAKSLVIT YYGNHEHDAP VQRRKSYSLK 180 KRSGSPMFQD ASNRTPRLGR PPFSSSAFQV FPPSLEPHLG MTQINMNGLS KLPSLPANQM 240 VHRYTWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-22	101	170	8	77	Probable WRKY transcription factor 4
2lex_A	1e-22	101	170	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106858.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593143	0.0	KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106856.1	0.0	PREDICTED: probable WRKY transcription factor 10 isoform X1
Refseq	XP_009106858.1	0.0	PREDICTED: probable WRKY transcription factor 10 isoform X3
TrEMBL	A0A3P6BM98	1e-153	A0A3P6BM98_BRACM; Uncharacterized protein
STRING	Bo3g185390.1	1e-146	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	3e-34	WRKY DNA-binding protein 10