PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106857.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 260aa MW: 29042.9 Da PI: 9.4822

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.6	2.2e-27	123	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+ YGqK ++g+++ r YY+Ct++gC vkk+ver a++ k ++itY g+H+h+ XP_009106857.1 123 LDDGYSWKNYGQKLIRGNPNVRRYYKCTFSGCDVKKHVERRADNAKSLVITYYGNHEHD 181 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-28	110	183	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-24	117	183	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	118	183	IPR003657	WRKY domain
SMART	SM00774	1.3E-27	123	182	IPR003657	WRKY domain
Pfam	PF03106	2.5E-21	124	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKEVCHVTMG GPVITPKTSA SSIPLIEIAP PSPDAIIGPP EMVESSGGDH ATMMISNNGL 60 PHQRMDVDQA PEDHNIIDVL NVEPSSPKRR GNEVSLSNMI IASRTGRYDE RVIIQMKSEE 120 NNLDDGYSWK NYGQKLIRGN PNVRRYYKCT FSGCDVKKHV ERRADNAKSL VITYYGNHEH 180 DAPVQRRKSY SLKKRSGSPM FQDASNRTPR LGRPPFSSSA FQVFPPSLEP HLGMTQINMN 240 GLSKLPSLPA NQMVHRYTWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-22	114	183	8	77	Probable WRKY transcription factor 4
2lex_A	3e-22	114	183	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106857.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593143	0.0	KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106857.1	0.0	PREDICTED: probable WRKY transcription factor 10 isoform X2
TrEMBL	A0A3P6BM98	1e-152	A0A3P6BM98_BRACM; Uncharacterized protein
STRING	Bo3g185390.1	1e-145	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	9e-34	WRKY DNA-binding protein 10