PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36004.5 Da PI: 5.2383 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.1 | 4.3e-50 | 18 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+d+elv++yL ++ g++++ + +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l XP_009106812.1 18 LPPGFRFHPKDDELVCDYLMARSLGHNTKQPPplLLIQVDLNKCEPWDIPKTACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAIL 112 79********************99998555332258999***********8777799************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl XP_009106812.1 113 R-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-59 | 8 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.372 | 18 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 19 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MESEEEKESS ISMVEAKLPP GFRFHPKDDE LVCDYLMARS LGHNTKQPPP LLLIQVDLNK 60 CEPWDIPKTA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM 120 RKTLVFYQGR APRGRKTDWV MHEFRLQGSF DPPTLNSPEV QEEDWVLCRV FHKNTQGDNM 180 GSCFDETVSA SLPPLMDSYI NFDQEPSSYL GHDQHFFTNE QVPCFSNLSQ NQTIHSNLTD 240 SVSELETPCK NPIPLFTGGS SPAMLPGLDS FSSSDQMVLK ALLSQLTKID GGIEVKESQS 300 YGEGSSESLL TDIAIPSTAW N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 1 | 176 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106812.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966749 | 0.0 | KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106812.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M4EPU9 | 0.0 | M4EPU9_BRARP; Uncharacterized protein | ||||
STRING | Bra030820.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |