PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106794.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 309aa MW: 35720.2 Da PI: 5.8696

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtde lv +yL++kv+g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd+ v XP_009106794.1 6 LPPGFRFHPTDEVLVAYYLERKVNGRTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRVVE 99 79**************************.99**********95334455788******************************999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl XP_009106794.1 100 S-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	6	154	IPR003441	NAC domain
Pfam	PF02365	5.5E-28	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEVLV AYYLERKVNG RTIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRVVES KKMKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTHPTSSS SIQESYALCR VFKKNIQIPK RKEEEMTTSV GKEEEEEEKK 180 KWKKYDGETM ERESEEVESL KIASAETSSS ELTQGILLDE ANSSSIFALH FSSSLLDDHD 240 HQLFENYPQL PFHSPLPLQG FPQLSMNEAE IISMDNSKQQ DFHYRDSING TLDEIFSFAS 300 SSATLPPAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	1	155	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	1	155	15	169	NAC domain-containing protein 19
3swm_B	2e-56	1	155	15	169	NAC domain-containing protein 19
3swm_C	2e-56	1	155	15	169	NAC domain-containing protein 19
3swm_D	2e-56	1	155	15	169	NAC domain-containing protein 19
3swp_A	2e-56	1	155	15	169	NAC domain-containing protein 19
3swp_B	2e-56	1	155	15	169	NAC domain-containing protein 19
3swp_C	2e-56	1	155	15	169	NAC domain-containing protein 19
3swp_D	2e-56	1	155	15	169	NAC domain-containing protein 19
4dul_A	1e-56	1	155	12	166	NAC domain-containing protein 19
4dul_B	1e-56	1	155	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106794.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	1e-162	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106794.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	9e-81	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	M4EPT6	0.0	M4EPT6_BRARP; Uncharacterized protein
STRING	Bra030807.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-149	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]