PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106704.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 608aa    MW: 65530.6 Da    PI: 5.4232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.41.1e-1092296082374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++       ++ p++e      +e++ +++l++e+sP++k++++
  XP_009106704.1 229 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP----AESSAPATEL---YGKEHIVSTQLLYELSPCFKLGFM 316
                     6889*************************************************9....3333344444...49********************** PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpfef 178
                     +aN aIl+a  ++    +  H+iDf+i++G+Q++ Ll+aL++R+ ++ p  +RiT+v + + g        +e+l+++g+rL+++ + lg++++f
  XP_009106704.1 317 AANLAILDASGNKnddgTSFHVIDFEIGEGGQYVHLLHALSTRRsGKNPlVVRITAVTNISDGfsvagqrGEERLRTIGDRLSELSDGLGISLKF 411
                     *********99988887889*********************9985444459********9988999999999*********************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     nv++  rl+dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P vv++ve+e++ n+++Fl r++e++ +y al+ds+e+
  XP_009106704.1 412 NVVAGLRLSDLSRESLGCHPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSESCACYGALLDSVES 506
                     **9888***************************************************************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrp 366
                     ++p+  ++r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ +    g++v+ee+g +++gW++r+
  XP_009106704.1 507 TVPSSYSDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLSNGNrvHPGFTVKEENGGVCFGWMGRT 600
                     ***************.**************************************************9998777789******************* PP

            GRAS 367 LvsvSaWr 374
                     L ++SaWr
  XP_009106704.1 601 LAVASAWR 608
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.516202586IPR005202Transcription factor GRAS
PfamPF035143.7E-107229608IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MASGFPGGGG GPEFYGVGGR SMPGGPINNN PQIPGIFLDQ IGNRISSGNG IAGKRTLADF  60
QQQSFHNQAA INAFLLRSVK PRNLQSPAID MSSFGGSSQR YGSPSFLPNL RFQTQQQPDY  120
TGIRMGIGSG NQTLSGVPCI EPVQNVNRAE ESENMLNSLR ELEKQLLDDD DAQGGDDDVS  180
VITHSNSNSD WLHGLVTPNP NPVLSSSPSS SSSSSSPSTA STTTSVCSRQ TVLEIATAIA  240
EGKTEIASEI LARVSQTPSQ RRNSEEKLVD FMVTALRSRI NPAESSAPAT ELYGKEHIVS  300
TQLLYELSPC FKLGFMAANL AILDASGNKN DDGTSFHVID FEIGEGGQYV HLLHALSTRR  360
SGKNPLVVRI TAVTNISDGF SVAGQRGEER LRTIGDRLSE LSDGLGISLK FNVVAGLRLS  420
DLSRESLGCH PDEPLAVNLA FKLYRVPDES VCMENPRDEL LRRVKGLNPS VVTLVEEEMN  480
SNTAPFLGRV SESCACYGAL LDSVESTVPS SYSDRAKVEE GIGRKLINAV ACEGIDRIER  540
CEVFGKWRMR MSMAGFELMP LSEKIAESMK SRLSNGNRVH PGFTVKEENG GVCFGWMGRT  600
LAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3522760811375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106704.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A3P6D4P50.0A0A3P6D4P5_BRACM; Uncharacterized protein
STRINGBo9g083130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8