PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 329aa MW: 37594.8 Da PI: 4.6537 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3.1e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l +s XP_009106441.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58 79******************************************998776 PP | |||||||
2 | K-box | 18.2 | 1.1e-07 | 120 | 200 | 8 | 88 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 s+ +++ ++l+qe+ +L++++++ ++e+R++ + +++e + e+qL + l+++ ++++++l +q++ ++q XP_009106441.1 120 SAINSDVQELEQEVYRLQQQLHMAEEELRKYEPDPSRFTTMEEYEASEKQLIETLTHVTQRREHILSDQLSSYETSAMQHQ 200 4667889**************************************************************998877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-28 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.55E-33 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK 60 TRVEDVFTRF INLPDQEREN ALTFTDQSRR PDFQSKEYLL RTLQQLKTEN DIALQLTNPS 120 AINSDVQELE QEVYRLQQQL HMAEEELRKY EPDPSRFTTM EEYEASEKQL IETLTHVTQR 180 REHILSDQLS SYETSAMQHQ NMGGPFVNDV AGGWLAENGP IQTQLFDASA NSAIYETLLQ 240 GSSSSSNQNN NMSECNVTNH NGDMFQEWAQ AYTSTTGLNP SALFPPMQHQ HGVVNPNIKE 300 SDIPVITREA PADHEVSDYD IRMPQLSSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-17 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_B | 4e-17 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_C | 4e-17 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_D | 4e-17 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106441.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189414 | 0.0 | AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106441.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_013720079.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q1PFC2 | 0.0 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A397YSF7 | 0.0 | A0A397YSF7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DGL8 | 0.0 | M4DGL8_BRARP; Uncharacterized protein | ||||
STRING | Bra015643.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 0.0 | AGAMOUS-like 66 |
Publications ? help Back to Top | |||
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