PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009106325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 993aa MW: 109324 Da PI: 8.6541 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.2e-40 | 135 | 211 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_009106325.1 135 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 211 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-33 | 127 | 196 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.197 | 132 | 209 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-38 | 133 | 213 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-29 | 135 | 208 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 2.49E-8 | 758 | 886 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.2E-6 | 797 | 885 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.42E-7 | 798 | 884 | No hit | No description |
PROSITE profile | PS50297 | 9.33 | 831 | 884 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 993 aa Download sequence Send to blast |
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQQNDWNPKM WEWDSQRFEA 60 KPVEAEVGNC STQFDLNARS NSEDDNNNNN NGGLSYEGEE RRGLDLNLSS GVMEETTRPN 120 KKVKSGSPGR NYPKCQVDNC NEDLSVAKDY HRRHKVCEVH SKATKALVGN QMQRFCQQCS 180 RFHLLSEFDE GKRSCRRRLA GHNRRRRKTQ PEEVTSGGAV AASDKNKANM DVMALLTALA 240 CAQGRNGSQS NGSPAVPQRE QLLQILNKIN ALPLPVDLVS KLNSIGVLAR KNLDQPTNSR 300 NDVNGGDSSP STMDLLAVLS STLGSSAPEA IAFLSKGGFD NKESNDKTKL TSPEKRTLEF 360 PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASSGKY YSSASSNPVE 420 DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPSPRNNCL PLELFGGSNR GAAAAAAAAN 480 PSYASSGSDY SPPSLNSDSQ DRTGKIVFKL LGKDPSQLPG TLRTEISSWL SSIPSEMESY 540 IRPGCVILSV YVAMSASAWE QLEENLVQRV SALVQDSEFW SSTRFLVNTG RQLASYKHGR 600 IRLSKSWRTL SSPELITVSP VAVVAGEETT LVVRGRSLTN DGISFRCAHM GNYTSMEVTG 660 TAHRSTKFDE LNVNKFKVKG PSSGSLGRCF VEVENGFRSD SFPLIIANAT ICKELNRLED 720 CPSSREEVLC FLNELGWLFQ KKCRSESDFS LPRFKFLLVC SVERDYSSLV RTILDMMVER 780 DGVMSKESLD MLAESQLLSR AVKRKNTKMA ETLIHYSAKR FIFLPSVKGP GGITPLHLAA 840 STSGSEDMID VLTNDPQEIG LSSWNTLVDA SGQTPFSYAA MRNNHGYNTL VSRKLADKRN 900 GQISLNIENG IDQIGVSKRL STELKRSCNT CASVALKYQK KVSGTRRLFP TRIIHSMVAV 960 ATVCVCVCVF MHAFPIVRQG SHFSWGGLDY GSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 125 | 208 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009106325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106325.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q700C2 | 0.0 | SPL16_ARATH; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | M4DGV6 | 0.0 | M4DGV6_BRARP; Uncharacterized protein | ||||
STRING | Bra015732.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3999 | 25 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76580.1 | 0.0 | SBP family protein |