PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106325.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 993aa MW: 109324 Da PI: 8.6541

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.2e-40	135	211	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_009106325.1 135 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 211 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-33	127	196	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.197	132	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-38	133	213	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-29	135	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-8	758	886	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-6	797	885	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.42E-7	798	884	No hit	No description
PROSITE profile	PS50297	9.33	831	884	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQQNDWNPKM WEWDSQRFEA 60 KPVEAEVGNC STQFDLNARS NSEDDNNNNN NGGLSYEGEE RRGLDLNLSS GVMEETTRPN 120 KKVKSGSPGR NYPKCQVDNC NEDLSVAKDY HRRHKVCEVH SKATKALVGN QMQRFCQQCS 180 RFHLLSEFDE GKRSCRRRLA GHNRRRRKTQ PEEVTSGGAV AASDKNKANM DVMALLTALA 240 CAQGRNGSQS NGSPAVPQRE QLLQILNKIN ALPLPVDLVS KLNSIGVLAR KNLDQPTNSR 300 NDVNGGDSSP STMDLLAVLS STLGSSAPEA IAFLSKGGFD NKESNDKTKL TSPEKRTLEF 360 PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASSGKY YSSASSNPVE 420 DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPSPRNNCL PLELFGGSNR GAAAAAAAAN 480 PSYASSGSDY SPPSLNSDSQ DRTGKIVFKL LGKDPSQLPG TLRTEISSWL SSIPSEMESY 540 IRPGCVILSV YVAMSASAWE QLEENLVQRV SALVQDSEFW SSTRFLVNTG RQLASYKHGR 600 IRLSKSWRTL SSPELITVSP VAVVAGEETT LVVRGRSLTN DGISFRCAHM GNYTSMEVTG 660 TAHRSTKFDE LNVNKFKVKG PSSGSLGRCF VEVENGFRSD SFPLIIANAT ICKELNRLED 720 CPSSREEVLC FLNELGWLFQ KKCRSESDFS LPRFKFLLVC SVERDYSSLV RTILDMMVER 780 DGVMSKESLD MLAESQLLSR AVKRKNTKMA ETLIHYSAKR FIFLPSVKGP GGITPLHLAA 840 STSGSEDMID VLTNDPQEIG LSSWNTLVDA SGQTPFSYAA MRNNHGYNTL VSRKLADKRN 900 GQISLNIENG IDQIGVSKRL STELKRSCNT CASVALKYQK KVSGTRRLFP TRIIHSMVAV 960 ATVCVCVCVF MHAFPIVRQG SHFSWGGLDY GSV

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQQNDWNPKM WEWDSQRFEA  60
KPVEAEVGNC STQFDLNARS NSEDDNNNNN NGGLSYEGEE RRGLDLNLSS GVMEETTRPN  120
KKVKSGSPGR NYPKCQVDNC NEDLSVAKDY HRRHKVCEVH SKATKALVGN QMQRFCQQCS  180
RFHLLSEFDE GKRSCRRRLA GHNRRRRKTQ PEEVTSGGAV AASDKNKANM DVMALLTALA  240
CAQGRNGSQS NGSPAVPQRE QLLQILNKIN ALPLPVDLVS KLNSIGVLAR KNLDQPTNSR  300
NDVNGGDSSP STMDLLAVLS STLGSSAPEA IAFLSKGGFD NKESNDKTKL TSPEKRTLEF  360
PPFVGGERTS SSNNPSPSQE TRSSSLSLQL FTSSPEDERQ QPTVASSGKY YSSASSNPVE  420
DRSPSSSPVM QELFPMQTSP ETMRSNNCKN SSPSPRNNCL PLELFGGSNR GAAAAAAAAN  480
PSYASSGSDY SPPSLNSDSQ DRTGKIVFKL LGKDPSQLPG TLRTEISSWL SSIPSEMESY  540
IRPGCVILSV YVAMSASAWE QLEENLVQRV SALVQDSEFW SSTRFLVNTG RQLASYKHGR  600
IRLSKSWRTL SSPELITVSP VAVVAGEETT LVVRGRSLTN DGISFRCAHM GNYTSMEVTG  660
TAHRSTKFDE LNVNKFKVKG PSSGSLGRCF VEVENGFRSD SFPLIIANAT ICKELNRLED  720
CPSSREEVLC FLNELGWLFQ KKCRSESDFS LPRFKFLLVC SVERDYSSLV RTILDMMVER  780
DGVMSKESLD MLAESQLLSR AVKRKNTKMA ETLIHYSAKR FIFLPSVKGP GGITPLHLAA  840
STSGSEDMID VLTNDPQEIG LSSWNTLVDA SGQTPFSYAA MRNNHGYNTL VSRKLADKRN  900
GQISLNIENG IDQIGVSKRL STELKRSCNT CASVALKYQK KVSGTRRLFP TRIIHSMVAV  960
ATVCVCVCVF MHAFPIVRQG SHFSWGGLDY GSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	125	208	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106325.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106325.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Swissprot	Q700C2	0.0	SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBL	M4DGV6	0.0	M4DGV6_BRARP; Uncharacterized protein
STRING	Bra015732.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein