PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 792aa MW: 88357.1 Da PI: 6.2973 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.8 | 1.2e-29 | 530 | 581 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009106295.1 530 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 581 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.052 | 518 | 601 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-25 | 533 | 581 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.84E-22 | 684 | 780 | No hit | No description |
PROSITE profile | PS51745 | 29.203 | 694 | 777 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.8E-24 | 694 | 777 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.5E-17 | 695 | 775 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.06E-36 | 695 | 771 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.9E-19 | 695 | 774 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MDSSFMDGLL LDGCWLETTT TDASEFPNFS PSTSLAPFDP SSFMWSPQQD NTAAISSSTT 60 LSHMYGQGFA ERSSLEDLST LNRRFWIGPS GGGHGSSVME RLVQAVKHIK DFTSERGDSL 120 IQLWVPVDRG GKRVLTTKEQ PFSHDPMSQR LAHYREISEN YQFSAEQEDS SSKDLVGLPG 180 RVFLGQVPEW TPDVRFFKNE EYPRVQHAQD CDVRGTLAIP VFEQGSKTCL GVIEVVMTTQ 240 MVKLSPELDS ICRALQAVDL RSTEVPVSPS LKGPDFSYQA ALPEIRNLLR CACETHKLPL 300 AQTWMSCLKQ SKTGCRHNDH NYIHCVSTID DACYVGDPTV RDFHEACSEH HLLKGQGVVG 360 EAFLTNGPCF SSDVSSYKKS EYPLSHHATM FGLHGTVAIR LRCIHTGSAD FVLEFFLPKD 420 CRDIEEQRRM LNALSTIMAH VPRSLRTVTE KELEEEGDQM VSEVETLPKI EETCEVHESS 480 SNPQHVGLAV DGEIGFDYGK GVSVVNENST FSSAGGGGSS RVTEKKKTKA EKNITLDVLR 540 QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK VGHSLQKIQR VIDSVQGVSG 600 HHLPIGSFYA NFPNLASSQE QQSKQTTFLP SSSHSQPAKS SSPGSSCSHT SSCSSETQAN 660 KEDPMNKARE DTRAIKQTQT TQLSPSTSSQ DDDFLRVKVS YEEEKIRFRM RNSRRLKDLL 720 WEIAKRFSIE DVSRYDLKYL DEDNEWVLLR CDDDVEECVD VCRSFPGETI KLLLQLSSQH 780 LQERSSVSGS LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106295.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106295.1 | 0.0 | PREDICTED: protein NLP5 isoform X2 | ||||
Swissprot | Q9SFW8 | 0.0 | NLP5_ARATH; Protein NLP5 | ||||
TrEMBL | M4DGY2 | 0.0 | M4DGY2_BRARP; Uncharacterized protein | ||||
STRING | Bra015758.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |