PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106294.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 804aa MW: 89755.7 Da PI: 6.2747

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.8	1.3e-29	542	593	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009106294.1 542 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 593 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	530	613	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	545	593	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.89E-22	696	792	No hit	No description
PROSITE profile	PS51745	29.203	706	789	IPR000270	PB1 domain
SMART	SM00666	1.8E-24	706	789	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-19	707	786	No hit	No description
Pfam	PF00564	1.6E-17	707	787	IPR000270	PB1 domain
CDD	cd06407	2.69E-36	707	783	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSLAPF DPSSFMWSPQ 60 QDNTAAISSS TTLSHMYGQG FAERSSLEDL STLNRRFWIG PSGGGHGSSV MERLVQAVKH 120 IKDFTSERGD SLIQLWVPVD RGGKRVLTTK EQPFSHDPMS QRLAHYREIS ENYQFSAEQE 180 DSSSKDLVGL PGRVFLGQVP EWTPDVRFFK NEEYPRVQHA QDCDVRGTLA IPVFEQGSKT 240 CLGVIEVVMT TQMVKLSPEL DSICRALQAV DLRSTEVPVS PSLKGPDFSY QAALPEIRNL 300 LRCACETHKL PLAQTWMSCL KQSKTGCRHN DHNYIHCVST IDDACYVGDP TVRDFHEACS 360 EHHLLKGQGV VGEAFLTNGP CFSSDVSSYK KSEYPLSHHA TMFGLHGTVA IRLRCIHTGS 420 ADFVLEFFLP KDCRDIEEQR RMLNALSTIM AHVPRSLRTV TEKELEEEGD QMVSEVETLP 480 KIEETCEVHE SSSNPQHVGL AVDGEIGFDY GKGVSVVNEN STFSSAGGGG SSRVTEKKKT 540 KAEKNITLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI 600 QRVIDSVQGV SGHHLPIGSF YANFPNLASS QEQQSKQTTF LPSSSHSQPA KSSSPGSSCS 660 HTSSCSSETQ ANKEDPMNKA REDTRAIKQT QTTQLSPSTS SQDDDFLRVK VSYEEEKIRF 720 RMRNSRRLKD LLWEIAKRFS IEDVSRYDLK YLDEDNEWVL LRCDDDVEEC VDVCRSFPGE 780 TIKLLLQLSS QHLQERSSVS GSLS

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSLAPF DPSSFMWSPQ  60
QDNTAAISSS TTLSHMYGQG FAERSSLEDL STLNRRFWIG PSGGGHGSSV MERLVQAVKH  120
IKDFTSERGD SLIQLWVPVD RGGKRVLTTK EQPFSHDPMS QRLAHYREIS ENYQFSAEQE  180
DSSSKDLVGL PGRVFLGQVP EWTPDVRFFK NEEYPRVQHA QDCDVRGTLA IPVFEQGSKT  240
CLGVIEVVMT TQMVKLSPEL DSICRALQAV DLRSTEVPVS PSLKGPDFSY QAALPEIRNL  300
LRCACETHKL PLAQTWMSCL KQSKTGCRHN DHNYIHCVST IDDACYVGDP TVRDFHEACS  360
EHHLLKGQGV VGEAFLTNGP CFSSDVSSYK KSEYPLSHHA TMFGLHGTVA IRLRCIHTGS  420
ADFVLEFFLP KDCRDIEEQR RMLNALSTIM AHVPRSLRTV TEKELEEEGD QMVSEVETLP  480
KIEETCEVHE SSSNPQHVGL AVDGEIGFDY GKGVSVVNEN STFSSAGGGG SSRVTEKKKT  540
KAEKNITLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI  600
QRVIDSVQGV SGHHLPIGSF YANFPNLASS QEQQSKQTTF LPSSSHSQPA KSSSPGSSCS  660
HTSSCSSETQ ANKEDPMNKA REDTRAIKQT QTTQLSPSTS SQDDDFLRVK VSYEEEKIRF  720
RMRNSRRLKD LLWEIAKRFS IEDVSRYDLK YLDEDNEWVL LRCDDDVEEC VDVCRSFPGE  780
TIKLLLQLSS QHLQERSSVS GSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106294.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106294.1	0.0	PREDICTED: protein NLP5 isoform X1
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A3P6BLE8	0.0	A0A3P6BLE8_BRACM; Uncharacterized protein
STRING	Bra015758.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein