PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106219.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 463aa MW: 50007.7 Da PI: 9.5247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	205	227	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_009106219.1 205 ACSQCGEVFPKLESLELHQAVrH 227 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.808	204	232	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	204	227	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.29E-21	229	459	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.5E-13	231	459	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MALLTILPEN AEPPKHTPPP SKRKKRENPT EQPHKPQKPH KPQKQKAAAP QKQPSSWDQI 60 KNLLTCKQIE GLRVHDPSKN SQPAPSTTAN LSPSKLSSSC SSICSFRDVA HGNTRVVHRA 120 DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR 180 KLSGCYECHM IVDPSRYPIS PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN 240 IVEIIFKSSW LKKDSPMCKI ERILKVHNTQ RTIQRFEDCR DAVMARALQT ARKDARCAAD 300 GNELLRFHCT TLTCSLGSRG SSSLCSNLPS CGVCNVIRHG FQGKSGAGGV AAAAASSGGV 360 RTTASSGRAD DLLRCGDDAR RVMLVCRVIA GRVKRVDLPA DSTVEEKKSP VEDNSTVGAS 420 TSGGVFDSVA VNAGVYSNLE ELVVYNPRAI LPCFVVIYKV LES

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MALLTILPEN AEPPKHTPPP SKRKKRENPT EQPHKPQKPH KPQKQKAAAP QKQPSSWDQI  60
KNLLTCKQIE GLRVHDPSKN SQPAPSTTAN LSPSKLSSSC SSICSFRDVA HGNTRVVHRA  120
DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR  180
KLSGCYECHM IVDPSRYPIS PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN  240
IVEIIFKSSW LKKDSPMCKI ERILKVHNTQ RTIQRFEDCR DAVMARALQT ARKDARCAAD  300
GNELLRFHCT TLTCSLGSRG SSSLCSNLPS CGVCNVIRHG FQGKSGAGGV AAAAASSGGV  360
RTTASSGRAD DLLRCGDDAR RVMLVCRVIA GRVKRVDLPA DSTVEEKKSP VEDNSTVGAS  420
TSGGVFDSVA VNAGVYSNLE ELVVYNPRAI LPCFVVIYKV LES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106219.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352975	0.0	AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106219.1	0.0	PREDICTED: uncharacterized protein LOC103832017
TrEMBL	M4DH47	0.0	M4DH47_BRARP; Uncharacterized protein
STRING	Bra015824.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein