PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 289aa MW: 32996.5 Da PI: 6.315 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.3 | 3.4e-10 | 221 | 258 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yps +e+ LA+++gL+++qV++WF N R + XP_009106196.1 221 FHHflHPYPSDAEKLMLASQTGLSKNQVSNWFINARVR 258 554459******************************98 PP | |||||||
2 | BELL | 102.8 | 2.4e-33 | 81 | 152 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++el++k++kLlsll++Vd+r+ y++ql++vissFe+vag gs+k+Yt lAl+a++rhF +L++ai +q+ XP_009106196.1 81 ENHELHIKITKLLSLLQQVDERFDIYCNQLEQVISSFEEVAGEGSSKLYTGLALQAMTRHFGSLQEAILSQL 152 689******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-13 | 11 | 150 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-28 | 20 | 148 | IPR006563 | POX domain |
SMART | SM00389 | 2.3E-10 | 202 | 266 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 207 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.20E-12 | 208 | 263 | No hit | No description |
SuperFamily | SSF46689 | 3.89E-18 | 208 | 271 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.2E-18 | 219 | 258 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.936 | 221 | 262 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEEFRVRHEF SSTTSVSLVT RYVKAARCLL EEVIDMGGRE VDLCNDVLIQ QLFPGRRRPG 60 FGLSSEIKSE LCNSGFMSLP ENHELHIKIT KLLSLLQQVD ERFDIYCNQL EQVISSFEEV 120 AGEGSSKLYT GLALQAMTRH FGSLQEAILS QLNSLRRRFI ISQDFVPKIV TSGLSQLSLF 180 DGNTPSSLQR LGWVQGPQRH AWKPIRGLPE TSVAILRAWL FHHFLHPYPS DAEKLMLASQ 240 TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-17 | 208 | 269 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 3e-17 | 208 | 269 | 5 | 66 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106196.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Refseq | XP_009106197.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Refseq | XP_018508545.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 0.0 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | M4DH67 | 0.0 | M4DH67_BRARP; Uncharacterized protein | ||||
STRING | Bra015844.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 0.0 | BEL1-like homeodomain 11 |