PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 398aa MW: 42822.1 Da PI: 8.9178 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f++ G C+yG+rC++ H++ XP_009106188.1 3 KELCRNFQQ-GSCRYGERCRYLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-7 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.924 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.22E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MRKELCRNFQ QGSCRYGERC RYLHPQQTKP NNPFGFGTQQ QQNKTSNNPF GFGVQGGSNS 60 SRPNQSQQPF QNTWQRNPSS GSGASTQQSG KQTQQADHKC TDPAACKRVI QEDLKNERPM 120 WKLTCYAHCK HLPCDVSGDI SYEELRAMAY EESKRGIPLQ SIVERERNLQ NAKVAEFENF 180 LRSPYRGAVT ANQTPSIFPP ATQVNSSPPG GFSAFNQQPA FPNTNAGGGP PNPFGRFNQQ 240 PNAFSLNTPQ PAPSGPSGFQ SQPSSFGPGP AAPSAFQPSV SFKPASFGPG PVAPSGFQSQ 300 PASFGPGPGL ATPPQNSSIF PSVTPTPAFN SNQNNQTGFS FNSPVASFTS PAVDTTNTPS 360 GTELQAGGAP VDTSIWLKEK WNPGEIPEQA PPDAFVHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009106188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 1e-180 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106188.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 | ||||
Swissprot | Q9FWS3 | 1e-180 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | M4DH74 | 0.0 | M4DH74_BRARP; Uncharacterized protein | ||||
STRING | Bra015851.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 1e-146 | C3H family protein |