PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009106115.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 280aa MW: 32228.6 Da PI: 6.1874

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009106115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.6	6.7e-25	115	165	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl XP_009106115.1 115 SKALSMETISRYFYMPITQAAMELDVGLTLLKRRCRELGFRRWPHRKLMSL 165 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	100	185	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-20	118	165	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVDHKLKEDK PFSFLTYSPS FDDHIALTFP SFDWEEELLP LHNNFVSQAF HLPTPSLSLP 60 DLEPLSQDVL DSYSSAEQNR GEDDLDMNTK KRRLNREHNV RIISDVTTYT TFPASKALSM 120 ETISRYFYMP ITQAAMELDV GLTLLKRRCR ELGFRRWPHR KLMSLLALIS NVKERQKMQG 180 GEKAGIFKNA VEILEDERRR IEENPDLEFS DKTKRLRQAC FKATHKMKKK NSLKSSEMSK 240 PSCSSSGSVL SEEESVIEGV ESDEEVKYLL CGFTNEFSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009106115.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189574	1e-162	AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106115.1	0.0	PREDICTED: protein RKD2
Refseq	XP_013649774.1	0.0	protein RKD2-like
Refseq	XP_013701812.1	0.0	protein RKD2-like
Swissprot	Q9CA66	1e-112	RKD2_ARATH; Protein RKD2
TrEMBL	A0A3P6BTQ6	0.0	A0A3P6BTQ6_BRACM; Uncharacterized protein
STRING	Bra015907.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-89	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]