PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106105.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 278aa    MW: 31347.3 Da    PI: 5.9842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  lv ++k++G g+W+t +++ g+ R++k+c++rw++yl
   XP_009106105.1 14 KGEWTAEEDRMLVAYIKEHGLGDWRTLPKRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding56.94.8e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
   XP_009106105.1  67 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.994961IPR017930Myb domain
SuperFamilySSF466893.13E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001671.82E-111661No hitNo description
PROSITE profilePS5129426.03162116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.43E-1069109No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRTTWFDDD GIKKGEWTAE EDRMLVAYIK EHGLGDWRTL PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHKPVV TVAKATSSST TSSPTPTPSS SSSTSSSFSS TGSARLLNKL AAGISSRKHA  180
LDRIKNVIMS EPRQAVEEDE MMIGSKEDEE VTGCSMEIDE NLISMTSFDE FLTCDFTPTY  240
TTGFVDAFGG YSLVEPYDLY QSDFYHETSD DQLDLFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009106105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382850.0KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106105.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLM4DHD40.0M4DHD4_BRARP; Uncharacterized protein
STRINGBra015911.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-119myb domain protein 95