PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105796.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Whirly
Protein Properties Length: 240aa    MW: 26097.8 Da    PI: 10.0774
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly207.31.7e-64601981139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     +++k++aal+v++v+ptf++++ gnl+++r+G++++++++a++erkydWekkq fals+tev++++++++++s+effhdp++k+sn+G+vrk+l+
  XP_009105796.1  60 AIFKGRAALSVEPVLPTFTKIEPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQLFALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKSLS 154
                     59********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     ++Pl+d sG+f++lsvt +++++n++++vPvskaefavl+s+++
  XP_009105796.1 155 IKPLADSSGYFFQLSVTDNIQNSNDRIVVPVSKAEFAVLKSAFS 198
                     *****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.1E-7249212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-6452214IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.2E-6061196IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMKQARTLLS RSLCNQSSSL FEGSSKSSAS RGFATWADSS ATKRADAAKP SSGRVFAPYA  60
IFKGRAALSV EPVLPTFTKI EPGNLRIDRR GSVMMTFMPA VSERKYDWEK KQLFALSPTE  120
VGSVISMGPQ DSSEFFHDPS MKSSNAGQVR KSLSIKPLAD SSGYFFQLSV TDNIQNSNDR  180
IVVPVSKAEF AVLKSAFSFA LPHILGWDRI TGGDIGMAAQ GIASLPKADP MQLELEWGKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-96462123168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-96462123168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-96462123168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-96462123168Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.15200.0flower
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105796.11e-176PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotQ8VYF71e-116WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLM4DI231e-175M4DI23_BRARP; Uncharacterized protein
STRINGBra016150.1-P1e-175(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-113WHIRLY 2