PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 196aa MW: 21976.8 Da PI: 9.7764 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 36 | 79 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl XP_009105772.1 36 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDDEVRIHWESYL 79 89******************.*********.***********9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.61E-15 | 21 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 26 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.632 | 29 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-13 | 33 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-11 | 36 | 79 | No hit | No description |
Pfam | PF00249 | 1.9E-13 | 36 | 79 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKESNFSKD EDDLILKLHA LLGNRWSLIA 60 GRLPGRTDDE VRIHWESYLE KKLMKMGIDP TNHRIYHHTN YTSRRFINAS YKKHETDIIS 120 DQSSSVSESC DMKLLPVSST NCSEANASSG NSRLPDLNIG LVPIKTVTSL PVGSLQEPSG 180 SSNHGSTSQE TLLLFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 14 | 83 | 39 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN379103 | 0.0 | JN379103.1 Brassica rapa subsp. oleifera myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105772.1 | 1e-144 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | I6TGL9 | 1e-142 | I6TGL9_BRARO; Myb-like transcription factor 2 | ||||
TrEMBL | M4DI37 | 1e-142 | M4DI37_BRARP; Uncharacterized protein | ||||
STRING | Bra016164.1-P | 1e-143 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 2e-83 | MYB-like 2 |