PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 383aa MW: 42619.6 Da PI: 6.8255 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.8 | 8.3e-27 | 207 | 266 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ XP_009105649.1 207 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGTHDHP 266 8***************************99**********934578899**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-28 | 191 | 268 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.593 | 201 | 268 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-24 | 202 | 268 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-33 | 206 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 207 | 266 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MIKEKISSCV HPSDGIVESD KEVELDATKA KLEKVREENE KLKLLLSTVL TDYKSLQMHV 60 SNVIRPQHED SMEMDTNSHD NFGVDISLRL GRSDLNVSKN VDEIDKISLD KISDEISEGS 120 DKKRSALGLG FRIQSCEDTD TDLTMKLDYL SKDVKHIKAD NKCISSRKDI KTARNEDHQE 180 AFEVHEQPGL KKTRVCVKAP CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV 240 RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSPSLSYYFP 300 FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP THSSLSFSSS SSDRPSPTNS HTLSFSGLRS 360 QAPLTKYSQM APLSHQTKLS GQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 206 | 268 | 14 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105649.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912404 | 0.0 | EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105649.1 | 0.0 | PREDICTED: probable WRKY transcription factor 36 | ||||
Refseq | XP_013728850.1 | 0.0 | probable WRKY transcription factor 36 | ||||
Swissprot | Q9CAR4 | 1e-157 | WRK36_ARATH; Probable WRKY transcription factor 36 | ||||
TrEMBL | A0A078HLK5 | 0.0 | A0A078HLK5_BRANA; BnaA07g28340D protein | ||||
TrEMBL | A0A397YXU6 | 0.0 | A0A397YXU6_BRACM; Uncharacterized protein | ||||
STRING | Bo6g110430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13913 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69810.1 | 1e-151 | WRKY DNA-binding protein 36 |
Publications ? help Back to Top | |||
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