PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105638.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 392aa    MW: 44618.6 Da    PI: 6.9855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-5251321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s+
  XP_009105638.1   5 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTSAGFWKATGTDRPIYSS 98 
                     579***************************.89***************7777889***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +gl+k+Lvfykgra kg+ktdW+mhe+rl
  XP_009105638.1  99 dGSKCIGLRKSLVFYKGRAAKGVKTDWMMHEFRL 132
                     66677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-594157IPR003441NAC domain
PROSITE profilePS5100558.3965157IPR003441NAC domain
PfamPF023652.2E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL PKFAMTGEKE  60
WYFYCPRDRK YRNSTRPNRV TSAGFWKATG TDRPIYSSDG SKCIGLRKSL VFYKGRAAKG  120
VKTDWMMHEF RLPSSSTHSD THLSPNDSWA ICRIFRKTST TAPKAIPHSF VSSLPTEAST  180
DTEPYEKSSN TSHISPENSA SFNFYKKNMN VTKPRSSYYD EKEVTKTSTC TSTSPFSYMD  240
FTSSASPGPC ADQQYLRSLL LASQETQPSQ LPKFINNNDI SSFLLNTSSS NSSFLGGYTN  300
QISSNIDLTT AILAQEQCPA LVNLSQEYQE VGFEENIDDA NQDHHHKLKF GDVSSTMVGD  360
QHQNQRHHML MESYYSSFST TNDDLPTCFS IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-55516117169NO APICAL MERISTEM PROTEIN
1ut4_B2e-55516117169NO APICAL MERISTEM PROTEIN
1ut7_A2e-55516117169NO APICAL MERISTEM PROTEIN
1ut7_B2e-55516117169NO APICAL MERISTEM PROTEIN
3swm_A3e-55516120172NAC domain-containing protein 19
3swm_B3e-55516120172NAC domain-containing protein 19
3swm_C3e-55516120172NAC domain-containing protein 19
3swm_D3e-55516120172NAC domain-containing protein 19
3swp_A3e-55516120172NAC domain-containing protein 19
3swp_B3e-55516120172NAC domain-containing protein 19
3swp_C3e-55516120172NAC domain-containing protein 19
3swp_D3e-55516120172NAC domain-containing protein 19
4dul_A2e-55516117169NAC domain-containing protein 19
4dul_B2e-55516117169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105638.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105638.20.0PREDICTED: protein FEZ-like, partial
SwissprotQ9ZVH01e-161FEZ_ARATH; Protein FEZ
TrEMBLM4CJL90.0M4CJL9_BRARP; Uncharacterized protein
STRINGBra004403.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-154NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]