PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 368aa MW: 40967.4 Da PI: 8.3416 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.2e-38 | 125 | 183 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC+s+ntkfCyynny++sqPr+fC++C+ryWt+GG++rnvPvG+grrknk XP_009105511.1 125 PDKLLPCPRCESANTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNKG 183 78999****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.3E-32 | 127 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.723 | 129 | 183 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-24 | 131 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 131 | 167 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSKSKDTEIK LFGTTITSLL AVDHHDPSSL SSIHGVSYQS KEPSSSSSSS CCPSTGPNMV 60 LANNHEHGNS RFKGPCILSD LNEPPRAAFE ISSPTSSKTN GDQQSEITTT TTSTSEDKPT 120 TLKKPDKLLP CPRCESANTK FCYYNNYNVS QPRHFCRNCQ RYWTAGGSMR NVPVGSGRRK 180 NKGWPCSNHY LKVTSEDYEN NNNSGTILSF GSSESSVTET VKHQENKTHQ EFLASQVMLP 240 NNTSPWPYQW SPTGPNTSFY PIPFYWGCTV PIWPISETSP CLGKRARDQT EVETKNTTLR 300 TSEATKNVVY PELPTKPEKN TEGGLSLFNR FETKGSNRRS LVPETSINLQ ENPAAMSRSM 360 NFRESMQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105511.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105511.1 | 0.0 | PREDICTED: cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 1e-171 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | A0A078K3J8 | 0.0 | A0A078K3J8_BRANA; BnaAnng41280D protein | ||||
TrEMBL | M4CJL2 | 0.0 | M4CJL2_BRARP; Uncharacterized protein | ||||
STRING | Bra004396.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13090 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 1e-163 | Dof family protein |
Publications ? help Back to Top | |||
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