PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 368aa    MW: 40967.4 Da    PI: 8.3416
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.2e-38125183260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     ++k l+cprC+s+ntkfCyynny++sqPr+fC++C+ryWt+GG++rnvPvG+grrknk 
  XP_009105511.1 125 PDKLLPCPRCESANTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNKG 183
                     78999****************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.3E-32127182IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.723129183IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-24131182IPR003851Zinc finger, Dof-type
PROSITE patternPS013610131167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSKSKDTEIK LFGTTITSLL AVDHHDPSSL SSIHGVSYQS KEPSSSSSSS CCPSTGPNMV  60
LANNHEHGNS RFKGPCILSD LNEPPRAAFE ISSPTSSKTN GDQQSEITTT TTSTSEDKPT  120
TLKKPDKLLP CPRCESANTK FCYYNNYNVS QPRHFCRNCQ RYWTAGGSMR NVPVGSGRRK  180
NKGWPCSNHY LKVTSEDYEN NNNSGTILSF GSSESSVTET VKHQENKTHQ EFLASQVMLP  240
NNTSPWPYQW SPTGPNTSFY PIPFYWGCTV PIWPISETSP CLGKRARDQT EVETKNTTLR  300
TSEATKNVVY PELPTKPEKN TEGGLSLFNR FETKGSNRRS LVPETSINLQ ENPAAMSRSM  360
NFRESMQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105511.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105511.10.0PREDICTED: cyclic dof factor 5-like
SwissprotQ9SEZ31e-171CDF5_ARATH; Cyclic dof factor 5
TrEMBLA0A078K3J80.0A0A078K3J8_BRANA; BnaAnng41280D protein
TrEMBLM4CJL20.0M4CJL2_BRARP; Uncharacterized protein
STRINGBra004396.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130901729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.11e-163Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]
  3. Martín G, et al.
    Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis.
    Curr. Biol., 2018. 28(2): p. 311-318.e5
    [PMID:29337078]