PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105509.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 320aa    MW: 37015.8 Da    PI: 8.5676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-16103148147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
   XP_009105509.1 103 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 148
                      899*****************************.***********996 PP
2Myb_DNA-binding58.91.2e-18155199147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l +a+ ++G++ W+ Iar ++ gRt++++k++w+ +
   XP_009105509.1 155 RRAFTEEEEERLMQAHSLYGNK-WAMIARLFP-GRTDNSVKNHWHVV 199
                      678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.06998149IPR017930Myb domain
SuperFamilySSF466893.44E-29101196IPR009057Homeodomain-like
SMARTSM007175.0E-14102151IPR001005SANT/Myb domain
PfamPF002495.7E-16103148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-27104156IPR009057Homeodomain-like
CDDcd001671.28E-12106147No hitNo description
PROSITE profilePS5129427.339150204IPR017930Myb domain
SMARTSM007174.6E-15154202IPR001005SANT/Myb domain
PfamPF002491.9E-15155198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-21157203IPR009057Homeodomain-like
CDDcd001671.58E-11157200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGMEIAYTNV SFPSITPHFP SSSHPLTINN NIVMSKDHHR WMDQIAYFSL NVNSDQHKGH  60
YYHASHGEEE MKNPNRCNCS TSSKKEMRDC GSCRHSLKAS VSRGHWRPAE DAKLKELVAV  120
YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH SLYGNKWAMI  180
ARLFPGRTDN SVKNHWHVVM ARKFREQSSV YPRRKTMITH KPLANPNPHS CNDFEPTRSD  240
LIHLVSNDQS HLMLPIPCFS GYDHGMLENQ MMIDDYSSRT REVATTFGDS NQTGKCEMLD  300
ESMNEKKKPH FFDFLGLGTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321012045108B-MYB
1h88_C9e-329220443159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-329220443159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.386e-90bud| flower| leaf| root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652333.20.0transcription factor MYB105-like
SwissprotQ9SEZ41e-147MY105_ARATH; Transcription factor MYB105
TrEMBLM4CJL00.0M4CJL0_BRARP; Uncharacterized protein
STRINGBra004394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-149myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]