PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 340aa MW: 38976.2 Da PI: 5.486 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.5 | 1.1e-20 | 13 | 53 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk XP_009105508.1 13 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 53 55679*********************************997 PP | |||||||
2 | K-box | 15.8 | 5.7e-07 | 145 | 179 | 47 | 81 |
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqieelq 81 s+ +LqqLe+ + +sl +iR +K+++l q ++l XP_009105508.1 145 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQLM 179 689************************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.511 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.06E-23 | 2 | 54 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-23 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-19 | 15 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRVKLKIKK LDSINARQAT YCKRKNGIMK KAKELSILCD IDVVLLMFSP AGKPSLCTGE 60 HSIGEVIGKF SQLAPQERAK RKLDNLEALK KTFMKLDHDV NISEFLERSK PTVEVVSEQV 120 RFLQKHLSEI HTRLSYWTEV EKVDSIDDLQ QLENSIRQSL YQIRVHKENV LQHQQQQLMS 180 IECKNESDID LDFGIDIEQQ LENFSWVRTD ENMKAPLKEE EDPNLQFYHT YKELTCSASS 240 SLESYSGLFG IKTPKLETGS IPGTSVDPNL QYSNLSFLND PKLQQLAEWN LLGSPADYYV 300 SQILEASYRP QFGGNWPSSE MSNYPFTVFD DPLLSRQANL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105508.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 2e-86 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A397YQF4 | 0.0 | A0A397YQF4_BRACM; Uncharacterized protein | ||||
STRING | Bra004393.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 1e-170 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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