PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105443.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 476aa    MW: 51529.7 Da    PI: 5.1018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09299347355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009105443.1 299 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 347
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17294365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-11294351No hitNo description
PROSITE profilePS5088815.478296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17297364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6299347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDVSEKDELR NGDDTTVNYD ESANNPPPDW RVSGSNPVSD SYPTENLMME TLWYDPTNVQ  60
AVGYGGFNGG GNASSSSSFR GNIDRSLEMG WSLPNLLPPK GGNGMFLPNA SSFLPPSMAQ  120
FPADSGFIER AARFSLFSGG SFSEMMNQQQ PLGNPESVGL FLQGQCTSNE VNVVGVAHND  180
ASAGMKETNV RSSEQGNKQN VSEDTQSSGG KGGETSSKGF DSKKRKRNKQ NAEADQSQRS  240
QQSEEEADNN GGGDKKRNDE QSPNSQGNKT NSGKQQGKQT SDPKDGYIHV RARRGQATNS  300
HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV  360
NPQMDFNLEG LLAKDALQLR AGTSSATPFP PNMPMVYPPL PHGFMQQTLS SMGRNISSPL  420
SPPINGGYKR QETNGWEGDL QNVIHINYGA GDVPPDSQAA AATEASLPSS NMKVEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229KKRKRNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105442.10.0PREDICTED: transcription factor bHLH49
RefseqXP_009105443.10.0PREDICTED: transcription factor bHLH49
RefseqXP_013649346.10.0transcription factor bHLH49-like
RefseqXP_022544844.10.0transcription factor bHLH49-like
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLM4CJG40.0M4CJG4_BRARP; Uncharacterized protein
STRINGBra004348.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]