PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33753.6 Da PI: 4.6545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.2e-14 | 109 | 156 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + r +lg+f t+e A++a+ rk++ XP_009105399.1 109 KPVGVRQRK-WGKWAAEIRHPI----TkNRTWLGTFETEEAAHQAYKDKRKEY 156 789*****9.**********73....359*********99*******999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.0E-40 | 5 | 269 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 9.62E-18 | 108 | 149 | No hit | No description |
SMART | SM00380 | 1.0E-12 | 109 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-9 | 109 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.779 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 110 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-14 | 111 | 162 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 112 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVGIRKQLCL SSLSDTKKPK RSNPQETQQQ PLRKVRILVN DPYATDDSSS DEGETKMRRI 60 VRVVNFPPLL ESATPSVEPT SVSSSEDSTK TISKKAAAAA ASRPRLSKKP VGVRQRKWGK 120 WAAEIRHPIT KNRTWLGTFE TEEAAHQAYK DKRKEYDALL ATSNDSVSVS ETSQCSRSSP 180 LEQDTSASPP ALKEEIKITT TPTAGVDSSS KEVLFGFNFA ELPIPDLGFF AEEGQMGDLG 240 FFTEEHDQLN LDCLFTDDQF DDFTMLGFED SGPSELPDWD FPDAEFDSSF FFADQHIPLK 300 SLAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105399.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105398.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_009105399.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Swissprot | Q9CA27 | 4e-84 | EF118_ARATH; Ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | M4CJD4 | 0.0 | M4CJD4_BRARP; Uncharacterized protein | ||||
STRING | Bra004318.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 8e-73 | ERF family protein |
Publications ? help Back to Top | |||
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