PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105347.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 384aa    MW: 43681 Da    PI: 4.5515
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.8e-33211132102
                     HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++          eF++++F +g+kell+
  XP_009105347.1  21 FLRKCYEMVDDSSTDSIISWSTNGdNSFVISDTTVFSAQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------CEFANDWFVRGQKELLK 106
                     9********************77769*****************************************99.........67*************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  XP_009105347.1 107 NVIRRKN 113
                     *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3412106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-3116111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5317111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-2821111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKSSSDRVD SSSPSSSVAP FLRKCYEMVD DSSTDSIISW STNGDNSFVI SDTTVFSAQL  60
LPKYFKHSNL SSFIRQLNIY GFRKVDADRC EFANDWFVRG QKELLKNVIR RKNVQSTSEH  120
QSKTTATDAS SQEEKSGESE LWKEVDILKG DKKALAQELV KVRQYQESTD TKMLHLEDRV  180
QGMEESQQEM LSFLVMVMQN PSLLVQLLQP KENNWRKAEG GGAKILDEVT DEGETNSKGL  240
PLVTYQAPSE GTTKSSSNEM NDFLRNADML KFCLDENRVP LIIPDLYDDG AWEKLLLLSP  300
SKKKKNKMQE KNVKKGIDDV TLEEKEEDED GGRMELDKSL ALELIEEEME KADDFDFDIG  360
QLTPERSKNL EILTQHMRLL ASDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241111119129Heat shock factor protein 1
5d5v_B1e-241111119129Heat shock factor protein 1
5d5v_D1e-241111119129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105347.10.0PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLM4CJ880.0M4CJ88_BRARP; Uncharacterized protein
STRINGBra004272.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-176heat shock transcription factor A8