PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 311aa MW: 34961.2 Da PI: 7.7626 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.2 | 1.7e-15 | 238 | 262 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd+C+FaHg XP_009105232.1 238 KTELCNKWQQTGACPYGDNCQFAHG 262 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-19 | 231 | 269 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-11 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-9 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.765 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-12 | 238 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-9 | 270 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-12 | 270 | 303 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-5 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 274 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEKVASAVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD 60 SLSLSPSPPY SSSSPPFRVD IATEHRLRQA SLILEYDELN ENYEVCLSRL QSLMTELDSL 120 RRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFRSQARRR SDPERNSLPK 180 SISVRSPGYL KMMSHGYGGA SRQTSQLGSD SVTQKVCVPT KGERDALELE VYRQGMTKTE 240 LCNKWQQTGA CPYGDNCQFA HGIDELRPVI RHPRYKTEVC RMIVTGSTCP YGHRCHFRHS 300 LTDQERMLLT H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-21 | 238 | 300 | 5 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105232.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_018508597.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C9N3 | 1e-133 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M4CJ05 | 0.0 | M4CJ05_BRARP; Uncharacterized protein | ||||
STRING | Bra004189.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10623 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-132 | C3H family protein |