PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105051.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 282aa    MW: 32803.4 Da    PI: 4.6269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++   G g+W+++a+  g++R +k+c++rw++yl
   XP_009105051.1 20 RGPWTLEEDTLLTNYILHNGEGRWNLVAKSAGLKRNGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding50.45.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_009105051.1  73 RGNLTPQEQFLILELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0781567IPR017930Myb domain
SuperFamilySSF466895.14E-3017114IPR009057Homeodomain-like
SMARTSM007171.3E-121969IPR001005SANT/Myb domain
PfamPF002492.9E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-212174IPR009057Homeodomain-like
CDDcd001671.08E-82267No hitNo description
PROSITE profilePS5129424.22668122IPR017930Myb domain
SMARTSM007173.9E-1472120IPR001005SANT/Myb domain
PfamPF002495.3E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2275121IPR009057Homeodomain-like
CDDcd001677.10E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEDSMKTKSF EESEEVGLRR GPWTLEEDTL LTNYILHNGE GRWNLVAKSA GLKRNGKSCR  60
LRWLNYLKPD IRRGNLTPQE QFLILELHSK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNSFTNCCP QNNNNKSLLP PQSYDSTSTQ  180
TYTDISSQNP GLSNIDGSSS SSTFMPDLTT VPYFIDPNTI IDGSMCNQEG NYQELGGYIP  240
EMEEYYYMGN SDIGTECHVA EAYEDVTQDP MWNMDDIWQF RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24181225108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.300361e-180root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105051.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756550.0KM975655.1 Brassica napus MYB transcription factor 62.1 (MYB62.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105051.10.0PREDICTED: transcription factor MYB21-like
SwissprotQ9C9G71e-151MYB62_ARATH; Transcription factor MYB62
TrEMBLM4CIK70.0M4CIK7_BRARP; Uncharacterized protein
STRINGBra004041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-145myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]