PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104997.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 386aa    MW: 42620.1 Da    PI: 9.0018
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-38122181261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk +
  XP_009104997.1 122 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 181
                     7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-30119179IPR003851Zinc finger, Dof-type
PfamPF027017.8E-32124179IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.546126180IPR003851Zinc finger, Dof-type
PROSITE patternPS013610128164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSKSRDIKLF GTTITSLSAV NHYDPSPLSA AHGGSDQSKE ASSSSSSSCS PSIRPDRVLA  60
DKNEQESSRF KDPYTLSHLN EPPKAASEIL SPLSSKTNTD QQSELTTTST SAADKPTTLK  120
KPDKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG  180
WPSSNHYLHV TSEDYENNNN LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQQHQTGQ  240
GFLPPQVMFP NNSSPWPYQW SPAGPNANFY PIPFYWGCTV PVWPTSETPT CLGKRSRDQT  300
QGGGMRDASI TTRERLVSET LSISEVTKTA VWSPKPERKT EGFSLFNGFE TKGSNRRSFV  360
PETSINLQAN PAAMSRSMNF RENMQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00223DAPTransfer from AT1G69570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104997.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534820.0AK353482.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104997.10.0PREDICTED: cyclic dof factor 5
SwissprotQ9SEZ30.0CDF5_ARATH; Cyclic dof factor 5
TrEMBLA0A078F3070.0A0A078F307_BRANA; BnaA07g24230D protein
TrEMBLA0A3P6BF960.0A0A3P6BF96_BRACM; Uncharacterized protein
TrEMBLM4CIG00.0M4CIG0_BRARP; Uncharacterized protein
STRINGBra003994.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130901729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.10.0Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]
  3. Martín G, et al.
    Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis.
    Curr. Biol., 2018. 28(2): p. 311-318.e5
    [PMID:29337078]