PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104996.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 280aa    MW: 32252.2 Da    PI: 5.3604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.41e-101233355
         G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                    +++m+++gLtl+h+kSHLQkYRl
  XP_009104996.1  1 MKAMEIPGLTLYHLKSHLQKYRL 23
                    799*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-9123IPR009057Homeodomain-like
PfamPF143791.7E-1971118IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKAMEIPGLT LYHLKSHLQK YRLGKSLKFD DNRLEVSSAL ETQEAESGNY SRDFRGSVNE  60
ENNNPANEGL KITEALQLQT EVQKKLHEQI EVVQRNLQVK IEAQGKYLQS VLMKAQQTLA  120
GYTSSTLGMD FSRTKLSRFA SLVNPSSSFS ELTQVEEYEE EAEDARESFL YRKKTENRGI  180
KLLRCSVESF LESSESSETK RNNDNDERIS VELPLMEIKS EVMTNKKKRN HNDVVCMECQ  240
LLKKIDFEVD DDEQELKLSL NSYKKNYGDV PEPKKRLGFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104994.10.0PREDICTED: myb family transcription factor PHL8-like isoform X1
SwissprotF4I2741e-114PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLM4CIF90.0M4CIF9_BRARP; Uncharacterized protein
STRINGBra003993.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-114G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]