PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104913.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 184aa    MW: 20237.4 Da    PI: 5.2392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-182372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+Wv+eIr+p     +  r++lg+f t+e+Aa a++ a+  ++g
  XP_009104913.1 23 AYRGVRKRK-WGKWVSEIREPG----TtNRIWLGSFETPEMAATAYDVAAFHFRG 72
                    69****999.**********83....349*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-292282No hitNo description
SuperFamilySSF541716.54E-222281IPR016177DNA-binding domain
PROSITE profilePS5103223.0112380IPR001471AP2/ERF domain
SMARTSM003802.3E-362386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-312381IPR001471AP2/ERF domain
PfamPF008474.3E-112372IPR001471AP2/ERF domain
PRINTSPR003671.7E-122435IPR001471AP2/ERF domain
PRINTSPR003671.7E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSSGRSNSTN NARNDGQAGI PSAYRGVRKR KWGKWVSEIR EPGTTNRIWL GSFETPEMAA  60
TAYDVAAFHF RGQGARLNFP ELVNSLPRPA DSSADSVRMA AHQAALYLRT EPVESAMQVD  120
TSSSSNVGTT MVRLSPREIQ AINESTLGSP TMLMHSSYDD PMGFDNDVGM NVWDAYQTDS  180
LWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-182485668ATERF1
3gcc_A3e-182485668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104913.11e-135PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-99ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM4CI911e-133M4CI91_BRARP; Uncharacterized protein
STRINGBra003924.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-102ERF family protein