PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 705aa MW: 77109.9 Da PI: 7.06 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.3e-17 | 34 | 89 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r L+k+lgL rq+k+WFq rR+++k XP_009104812.1 34 KKRYHRHTAQQIQRLESSFRECPHPDDKQRNLLSKELGLAPRQIKFWFQKRRTQRK 89 688999***********************************************998 PP | |||||||
2 | START | 163.4 | 1.6e-51 | 219 | 440 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 +a++a++el++++ +ep+W++s e++n + f++s + ++ea+r sg+v+m+++ lv ++d++ +W e ++ + +tl+ XP_009104812.1 219 IALTAMDELLRLVHTNEPLWSRSDgrgEILNLGSYENVFPRSSNrgknhnVRIEASRSSGIVFMNAMSLVDMFMDSA-KWAELFPsivaASKTLA 312 6899**********************9999999999999888889999999**************************.*******99999***** PP EECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 84 vissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 v+ssg gal+lm+ e+ +lsplv+ R+f +Ry++q ++g+w++v vS +q+++ +s++ R +pSg+li++++ng+skvtwveh+ XP_009104812.1 313 VVSSGmgggtheGALHLMYEEMEVLSPLVAtREFCELRYCQQIEQGSWIVVNVSYHLPQFVS-HSHSYR---FPSGCLIQDMPNGYSKVTWVEHT 403 **************************************************************.999999...*********************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 + +++ p h+l+r +v++g+a+ga +wv tlqr ce+ XP_009104812.1 404 ETEEKEPvHELYREMVHKGIAFGAERWVTTLQRMCER 440 ***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 9 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-17 | 17 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-15 | 32 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.25E-16 | 34 | 92 | No hit | No description |
Pfam | PF00046 | 9.8E-15 | 34 | 89 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 49.278 | 209 | 443 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.87E-33 | 210 | 442 | No hit | No description |
CDD | cd08875 | 8.39E-103 | 213 | 439 | No hit | No description |
SMART | SM00234 | 6.2E-42 | 218 | 440 | IPR002913 | START domain |
Pfam | PF01852 | 8.4E-45 | 219 | 440 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-7 | 271 | 439 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.18E-18 | 459 | 692 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MSFVVGGSGS GGGDGGGGGG SSQRHDASES DRKKKRYHRH TAQQIQRLES SFRECPHPDD 60 KQRNLLSKEL GLAPRQIKFW FQKRRTQRKA QHERADNSAL KAENDKIRCE NIAIREAIKH 120 AICPNCGGPP VSEDPYLDEQ KLRMENAHLR QELERMSTVA SKYMGRPISS HISTLHPMHI 180 SPLDLSMTGP SLDFDLLPGS SMSSNFAVSD MDKPIMNDIA LTAMDELLRL VHTNEPLWSR 240 SDGRGEILNL GSYENVFPRS SNRGKNHNVR IEASRSSGIV FMNAMSLVDM FMDSAKWAEL 300 FPSIVAASKT LAVVSSGMGG GTHEGALHLM YEEMEVLSPL VATREFCELR YCQQIEQGSW 360 IVVNVSYHLP QFVSHSHSYR FPSGCLIQDM PNGYSKVTWV EHTETEEKEP VHELYREMVH 420 KGIAFGAERW VTTLQRMCER FASLLAPAVS SLGGVIPSPE GKRSMMRLAH RMVSNYCISV 480 SRSNNTRSTV VAELNDVGVR VTAHKSPEPN GTILSAATTF WLPNSPQNVF NFLKDERTRP 540 QWDVLSNSNA VQEVAHIANG SHPGCCISVL RASSASQSNN MLILQETSID SSGALVVYSP 600 VDLSALNIAM NGDDTSYIPL LSSGFAISPD GNRNSPSAEQ GGASSSSGYG GGGSLITVGF 660 QIMVSNLPSA KLNMESVETV NNLIGTTVHQ IKTGLNNCPS ASTTA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 20 | SGSGGGDGGGGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.16967 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104812.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ182489 | 0.0 | DQ182489.1 Brassica napus baby boom interacting protein 1B mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104812.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | M4CI13 | 0.0 | M4CI13_BRARP; Uncharacterized protein | ||||
STRING | Bra003846.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |