PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104762.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 264aa    MW: 29936.6 Da    PI: 4.9767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  lv +++++G g+W++ +++ g+ R++k+c++rw++yl
   XP_009104762.1 14 KGEWTAEEDRMLVAYINEYGLGDWRAMPKRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding57.82.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++ + +lG++ W++Ia++m+ +Rt++++k++w++ 
   XP_009104762.1  67 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKEMP-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.664961IPR017930Myb domain
SuperFamilySSF466894.49E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002495.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-231568IPR009057Homeodomain-like
CDDcd001674.11E-111661No hitNo description
PROSITE profilePS5129426.04262116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002495.1E-1767111IPR001005SANT/Myb domain
CDDcd001671.11E-1069109No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRTTWYDDE GLKKGEWTAE EDRMLVAYIN EYGLGDWRAM PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEDIIK FHSLLGNRWA AIAKEMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHEPVV NVKANSSSTT SSPTLTPSSS TTSSSFSSTS SARLLNRLAT GISSRKQGFD  180
RIKNVILSEP RQAVKEDALM ISSKEEEEEV DGCFIESDDN LISTTSLYEL LSEPYDMYQS  240
DFGLEVDDQF DLFLEIPTLG QDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.97970.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104762.10.0PREDICTED: transcription factor MYB122-like
SwissprotQ9LE634e-62MY106_ARATH; Transcription factor MYB106
TrEMBLM4CHW80.0M4CHW8_BRARP; Uncharacterized protein
STRINGBra003801.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-101myb domain protein 95