PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104358.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 286aa    MW: 32322.1 Da    PI: 7.3911
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.94.2e-3321124199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++     ++++ ++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  ++ 
  XP_009104358.1  21 FEKVVTPSDVGKLNRLVIPKQHAERYfpldnNSDSSKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPGNKD 115
                     99***************************99666778899************************************************9966777 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     +l++ ++r+
  XP_009104358.1 116 KLFIDWRRR 124
                     89****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-4311128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3318127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-2619113No hitNo description
PfamPF023621.6E-3021124IPR003340B3 DNA binding domain
SMARTSM010191.2E-2421125IPR003340B3 DNA binding domain
PROSITE profilePS5086314.70621125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNQEEENPVE KASSMEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPLD NNSDSSKGLL  60
LNFEDRTGNS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRD PGNKDKLFID  120
WRRRPKIPDH HHQFAGAMFP RFYSFSHPQN LYHRYQQDLG IGYYVSSMER NDPTAVIESV  180
PLIMQRRAAH VAAIPSSRGE KRLRLFGVDM ECGGGGGSVN STEEESSSSG GGGGVSMASV  240
GSLLQLRLVS SDDESLVAME AASVDEDHHL FTKKGKSSLS FDLDRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-63161273116B3 domain-containing transcription factor NGA1
5os9_B4e-63161273116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728771e-150AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104358.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-161NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLM4CGZ90.0M4CGZ9_BRARP; Uncharacterized protein
STRINGBra003482.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-149B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]