PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009103815.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 276aa MW: 32264.5 Da PI: 6.8852

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009103815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75	8.9e-24	151	200	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e+++ yF++pi++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+ XP_009103815.1 151 KSLSREEIKPYFYMPITKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200 789********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.142	135	220	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-20	153	200	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MTDHKQLRNW SQFDDYEFIQ EENLFSLFDH SLSFDYNSST NNPLSDIQTQ TWFSFQDIIN 60 VDPISTCFLA GDHTFMASDD VQAISTFSQD VFSGSWNEIT GNFNNHFEPI RNEMSSIGAP 120 NMEMILHESN NTMKEITCYK RRERTDGVLV KSLSREEIKP YFYMPITKAA KELNVGLTLL 180 KKKSRELGIS RWPHRKLMSI QGIITNLLDH LGKTEDERIR SKLTKALKIL EREKKMIEED 240 PNLEFGDETK RLRQACFKAN YKRRRILSIS NTSFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009103815.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103815.1	0.0	PREDICTED: protein RKD3-like
Swissprot	Q9FGD1	7e-95	RKD3_ARATH; Protein RKD3
TrEMBL	A0A397YSP6	0.0	A0A397YSP6_BRACM; Uncharacterized protein
STRING	Bo7g064180.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	3e-97	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]