PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009103808.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 961aa MW: 106705 Da PI: 6.6734

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009103808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	639	689	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_009103808.1 639 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 689 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	628	709	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	642	689	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.55E-23	853	945	No hit	No description
SMART	SM00666	5.0E-27	858	943	IPR000270	PB1 domain
PROSITE profile	PS51745	28.375	858	943	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.2E-22	858	942	No hit	No description
Pfam	PF00564	7.7E-18	860	942	IPR000270	PB1 domain
CDD	cd06407	1.99E-39	860	942	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MEGSGGGGFL PNPSFGAFPE TAMDMDFMEE LFFDGCWLET TDGKSLKQTT GQQAPSSTNM 60 NDNNNNNNSF LYGYQFSENP SQDHISNGDT GRKFPPGFLK MEDLTNQPMT QVPFDQSAAT 120 SSSQAEKFLL EETERGRRYW IAPRTSQGPS SSVKDRLFQA INGLKVQDKD FLIQIWLPIQ 180 QEGKNFLTTL DQPHFFNPKY KSLKRYRDVS VSYNFLADED SKESVGLPGR VFLGKLPEWT 240 PDVRFFRSEE YPRIKEAQRC DVRGSLALPV FESGSGICLG VVEIVTTTQK MNYRPELENI 300 CKALEAVNLR SSANMKSPSS EFLQVYKQFY CAVIPEVSVF LTSVCRSYDL PLALTWAPCA 360 RQGRGGSRHS DENFSECVST LDSACFVLDQ QSHNFQEACS EHHLLQGEGI VGKAFKATKL 420 FFVPEVTTFS KTNYPLAHHA KISGLHAALA VPLKNKFNGS VEFVLEFFFP KNCLDTEAQQ 480 EMLKSLSVTL QNDFRSLNLV IDKEMELEVV FPVREELLFS GNAETGESLK PLPLEEISHE 540 DSSWISHMIN ANEKGKGVSL SWEYQKEEPK EEFMLTSGWD NNNNQIGSFL SDAEQFQKAS 600 NSGGLRLDID PSFDSASFGV GQTLLGSRRP GEKRRTKTEK TIGLEVLRQY FAGSLKDAAK 660 SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI QLDSFYTSFP 720 ELSSPNNVSS TGTGTSFKNN DQPSHLNPQT ENGVSPAVAP TSSPPSSSCS HSSGSSTCCS 780 TGANQSTNTA NTSNTISTRM AENAGAILKR ARSEVRLRTV NQEETKSLSR TLSHRAFSEH 840 PLLSNLPRSK SLKAVGGASK VKATFGEAKV RFTFLPTWGF RELQHEIARR FNIDNNIIAT 900 FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SHSRTIKISV HEASQAKLGG SFGSTGPVPL 960 L

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MEGSGGGGFL PNPSFGAFPE TAMDMDFMEE LFFDGCWLET TDGKSLKQTT GQQAPSSTNM  60
NDNNNNNNSF LYGYQFSENP SQDHISNGDT GRKFPPGFLK MEDLTNQPMT QVPFDQSAAT  120
SSSQAEKFLL EETERGRRYW IAPRTSQGPS SSVKDRLFQA INGLKVQDKD FLIQIWLPIQ  180
QEGKNFLTTL DQPHFFNPKY KSLKRYRDVS VSYNFLADED SKESVGLPGR VFLGKLPEWT  240
PDVRFFRSEE YPRIKEAQRC DVRGSLALPV FESGSGICLG VVEIVTTTQK MNYRPELENI  300
CKALEAVNLR SSANMKSPSS EFLQVYKQFY CAVIPEVSVF LTSVCRSYDL PLALTWAPCA  360
RQGRGGSRHS DENFSECVST LDSACFVLDQ QSHNFQEACS EHHLLQGEGI VGKAFKATKL  420
FFVPEVTTFS KTNYPLAHHA KISGLHAALA VPLKNKFNGS VEFVLEFFFP KNCLDTEAQQ  480
EMLKSLSVTL QNDFRSLNLV IDKEMELEVV FPVREELLFS GNAETGESLK PLPLEEISHE  540
DSSWISHMIN ANEKGKGVSL SWEYQKEEPK EEFMLTSGWD NNNNQIGSFL SDAEQFQKAS  600
NSGGLRLDID PSFDSASFGV GQTLLGSRRP GEKRRTKTEK TIGLEVLRQY FAGSLKDAAK  660
SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI QLDSFYTSFP  720
ELSSPNNVSS TGTGTSFKNN DQPSHLNPQT ENGVSPAVAP TSSPPSSSCS HSSGSSTCCS  780
TGANQSTNTA NTSNTISTRM AENAGAILKR ARSEVRLRTV NQEETKSLSR TLSHRAFSEH  840
PLLSNLPRSK SLKAVGGASK VKATFGEAKV RFTFLPTWGF RELQHEIARR FNIDNNIIAT  900
FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SHSRTIKISV HEASQAKLGG SFGSTGPVPL  960
L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009103808.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103570.1	0.0	PREDICTED: protein NLP2
Refseq	XP_009103644.1	0.0	PREDICTED: protein NLP2
Refseq	XP_009103715.1	0.0	PREDICTED: protein NLP2
Refseq	XP_009103768.1	0.0	PREDICTED: protein NLP2
Refseq	XP_009103808.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	M4D543	0.0	M4D543_BRARP; Uncharacterized protein
STRING	Bra011600.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein