PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103762.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 276aa    MW: 32618.7 Da    PI: 9.3295
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.5e-1789142356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eql++Le+ Fe  +++ ++++ eLA+ lgL+ rq+++WFqNrRa+ k
  XP_009103762.1  89 KKRRLNMEQLKTLEKNFELGNKLAQHRKLELARALGLQPRQITIWFQNRRARSK 142
                     456899**********************************************99 PP
2HD-ZIP_I/II110.51.2e-3588180193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eq+k+LE++Fe  +kL ++rK elar+Lglqprq+ +WFqnrRAR ktkqlE dy+ Lkr++++lk+e+ +L++++++L++++k+
  XP_009103762.1  88 EKKRRLNMEQLKTLEKNFELGNKLAQHRKLELARALGLQPRQITIWFQNRRARSKTKQLEXDYDELKRQVKSLKHETXTLQTQNQKLEAQVKA 180
                     69***************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-1774145IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1776146IPR009057Homeodomain-like
PROSITE profilePS5007116.95784144IPR001356Homeobox domain
SMARTSM003891.4E-1687148IPR001356Homeobox domain
CDDcd000866.52E-1389145No hitNo description
PfamPF000462.2E-1489142IPR001356Homeobox domain
PRINTSPR000315.8E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000315.8E-6124140IPR000047Helix-turn-helix motif
PfamPF021831.0E-9144184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MINERFLRWR GRNRSKRKHV LYLQLIFLNF TLQNHHQDEE DYPLSVLPSQ DFHWFLGKRS  60
PIRNVEGFCN LEMNGDEEFS XDGSKLGEKK RRLNMEQLKT LEKNFELGNK LAQHRKLELA  120
RALGLQPRQI TIWFQNRRAR SKTKQLEXDY DELKRQVKSL KHETXTLQTQ NQKLEAQVKA  180
FKSREPIEPI NLNXETEGSY SKKSENISGD IRPAEIDSQF AGGHPPSLPT TTTMQFFQDS  240
SSEQRMVKEE NSIRNMFCGI DDQSGFWPWL DQQHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116RNRSKR
2136144RRARSKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaves, in the adaxial domain of leaf primordia and the rib meristem. Expressed in the styles of flowers and siliques. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:17387478}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103762.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508419.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-23
SwissprotQ8LFD31e-142ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLV4MRF61e-144V4MRF6_EUTSA; Uncharacterized protein
STRINGXP_006415983.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-145homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]